Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.93■□□□□ 0.46
COL5A1P20908 AF238378.1-201ENST00000526806 358 ntBASIC17.93■□□□□ 0.46
COL5A1P20908 AC009065.1-201ENST00000564055 1225 ntBASIC17.93■□□□□ 0.46
COL5A1P20908 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.93■□□□□ 0.46
COL5A1P20908 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL5A1P20908 AC124864.1-201ENST00000623408 392 ntBASIC17.93■□□□□ 0.46
COL5A1P20908 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.93■□□□□ 0.46
COL5A1P20908 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
COL5A1P20908 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A1P20908 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.92■□□□□ 0.46
COL5A1P20908 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.92■□□□□ 0.46
COL5A1P20908 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.92■□□□□ 0.46
COL5A1P20908 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.92■□□□□ 0.46
COL5A1P20908 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL5A1P20908 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
COL5A1P20908 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.91■□□□□ 0.46
COL5A1P20908 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A1P20908 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A1P20908 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A1P20908 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A1P20908 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A1P20908 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.91■□□□□ 0.46
COL5A1P20908 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
COL5A1P20908 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.91■□□□□ 0.46
COL5A1P20908 RN7SL606P-201ENST00000472779 293 ntBASIC17.91■□□□□ 0.46
COL5A1P20908 AC091607.1-201ENST00000490318 1060 ntBASIC17.91■□□□□ 0.46
COL5A1P20908 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL5A1P20908 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.91■□□□□ 0.46
COL5A1P20908 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.91■□□□□ 0.46
COL5A1P20908 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
COL5A1P20908 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
COL5A1P20908 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A1P20908 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A1P20908 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A1P20908 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.91■□□□□ 0.46
COL5A1P20908 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.91■□□□□ 0.46
COL5A1P20908 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.91■□□□□ 0.46
COL5A1P20908 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.91■□□□□ 0.46
COL5A1P20908 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.91■□□□□ 0.46
COL5A1P20908 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL5A1P20908 AC006333.2-201ENST00000607957 2099 ntBASIC17.91■□□□□ 0.46
COL5A1P20908 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL5A1P20908 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.9■□□□□ 0.46
COL5A1P20908 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A1P20908 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A1P20908 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A1P20908 IL9RP2-201ENST00000423948 1312 ntBASIC17.9■□□□□ 0.46
COL5A1P20908 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.9■□□□□ 0.46
COL5A1P20908 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A1P20908 KRT8P32-201ENST00000512863 1461 ntBASIC17.9■□□□□ 0.46
COL5A1P20908 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A1P20908 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A1P20908 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.9■□□□□ 0.46
COL5A1P20908 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.9■□□□□ 0.46
COL5A1P20908 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL5A1P20908 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.9■□□□□ 0.46
COL5A1P20908 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.9■□□□□ 0.46
COL5A1P20908 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A1P20908 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A1P20908 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL5A1P20908 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL5A1P20908 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL5A1P20908 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.89■□□□□ 0.46
COL5A1P20908 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.89■□□□□ 0.46
COL5A1P20908 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A1P20908 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A1P20908 MIR564-202ENST00000385049 94 ntBASIC17.89■□□□□ 0.45
COL5A1P20908 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.89■□□□□ 0.45
COL5A1P20908 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.89■□□□□ 0.45
COL5A1P20908 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.89■□□□□ 0.45
COL5A1P20908 AC117500.6-201ENST00000624871 588 ntBASIC17.89■□□□□ 0.45
COL5A1P20908 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.89■□□□□ 0.45
COL5A1P20908 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A1P20908 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL5A1P20908 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL5A1P20908 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.89■□□□□ 0.45
COL5A1P20908 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A1P20908 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
COL5A1P20908 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A1P20908 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.89■□□□□ 0.45
COL5A1P20908 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL5A1P20908 AC079776.4-201ENST00000511039 504 ntBASIC17.88■□□□□ 0.45
COL5A1P20908 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms