Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC073130.3-201ENST00000624389 2278 ntBASIC22.01■■□□□ 1.11
HLA-DOAP06340 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC22.01■■□□□ 1.11
HLA-DOAP06340 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HLA-DOAP06340 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
HLA-DOAP06340 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
HLA-DOAP06340 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC22■■□□□ 1.11
HLA-DOAP06340 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HLA-DOAP06340 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC22■■□□□ 1.11
HLA-DOAP06340 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC22■■□□□ 1.11
HLA-DOAP06340 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC22■■□□□ 1.11
HLA-DOAP06340 Z98044.1-201ENST00000632503 1764 ntBASIC22■■□□□ 1.11
HLA-DOAP06340 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC22■■□□□ 1.11
HLA-DOAP06340 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HLA-DOAP06340 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HLA-DOAP06340 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC22■■□□□ 1.11
HLA-DOAP06340 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC22■■□□□ 1.11
HLA-DOAP06340 AC009065.1-201ENST00000564055 1225 ntBASIC22■■□□□ 1.11
HLA-DOAP06340 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC22■■□□□ 1.11
HLA-DOAP06340 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC22■■□□□ 1.11
HLA-DOAP06340 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC22■■□□□ 1.11
HLA-DOAP06340 LITAF-220ENST00000620789 692 ntTSL 5 BASIC22■■□□□ 1.11
HLA-DOAP06340 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC22■■□□□ 1.11
HLA-DOAP06340 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HLA-DOAP06340 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC22■■□□□ 1.11
HLA-DOAP06340 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC22■■□□□ 1.11
HLA-DOAP06340 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.99■■□□□ 1.11
HLA-DOAP06340 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
HLA-DOAP06340 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
HLA-DOAP06340 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.99■■□□□ 1.11
HLA-DOAP06340 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.99■■□□□ 1.11
HLA-DOAP06340 AC092329.2-201ENST00000598402 547 ntBASIC21.99■■□□□ 1.11
HLA-DOAP06340 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
HLA-DOAP06340 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HLA-DOAP06340 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 AL450487.1-201ENST00000426799 995 ntBASIC21.98■■□□□ 1.11
HLA-DOAP06340 TSPY22P-201ENST00000427496 604 ntBASIC21.98■■□□□ 1.11
HLA-DOAP06340 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 AL357033.4-201ENST00000617703 1807 ntBASIC21.98■■□□□ 1.11
HLA-DOAP06340 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.98■■□□□ 1.11
HLA-DOAP06340 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
HLA-DOAP06340 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HLA-DOAP06340 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HLA-DOAP06340 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HLA-DOAP06340 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HLA-DOAP06340 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HLA-DOAP06340 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HLA-DOAP06340 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HLA-DOAP06340 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HLA-DOAP06340 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HLA-DOAP06340 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms