Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC15.64■□□□□ 0.09
ABCA1O95477 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
ABCA1O95477 AL022342.1-201ENST00000400363 863 ntBASIC15.64■□□□□ 0.09
ABCA1O95477 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
ABCA1O95477 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
ABCA1O95477 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
ABCA1O95477 SEC1P-202ENST00000473944 940 ntBASIC15.64■□□□□ 0.09
ABCA1O95477 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.64■□□□□ 0.09
ABCA1O95477 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
ABCA1O95477 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
ABCA1O95477 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.63■□□□□ 0.09
ABCA1O95477 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC15.63■□□□□ 0.09
ABCA1O95477 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
ABCA1O95477 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.63■□□□□ 0.09
ABCA1O95477 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 RNF165-205ENST00000588679 2904 ntBASIC15.63■□□□□ 0.09
ABCA1O95477 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 AC079781.3-201ENST00000449110 356 ntBASIC15.63■□□□□ 0.09
ABCA1O95477 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
ABCA1O95477 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
ABCA1O95477 WDR6-223ENST00000627177 207 ntTSL 2 BASIC15.63■□□□□ 0.09
ABCA1O95477 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
ABCA1O95477 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA1O95477 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA1O95477 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC15.62■□□□□ 0.09
ABCA1O95477 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA1O95477 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC15.62■□□□□ 0.09
ABCA1O95477 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA1O95477 AL162741.1-201ENST00000565563 1558 ntBASIC15.62■□□□□ 0.09
ABCA1O95477 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15.62■□□□□ 0.09
ABCA1O95477 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
ABCA1O95477 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA1O95477 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC15.62■□□□□ 0.09
ABCA1O95477 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
ABCA1O95477 PPIH-202ENST00000372549 327 ntTSL 3 BASIC15.62■□□□□ 0.09
ABCA1O95477 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.62■□□□□ 0.09
ABCA1O95477 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
ABCA1O95477 AP002469.2-201ENST00000531724 424 ntBASIC15.62■□□□□ 0.09
ABCA1O95477 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.62■□□□□ 0.09
ABCA1O95477 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC15.62■□□□□ 0.09
ABCA1O95477 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA1O95477 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA1O95477 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
ABCA1O95477 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.62■□□□□ 0.09
ABCA1O95477 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA1O95477 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA1O95477 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 DRAXINP1-201ENST00000437611 948 ntBASIC15.61■□□□□ 0.09
ABCA1O95477 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC15.61■□□□□ 0.09
ABCA1O95477 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.61■□□□□ 0.09
ABCA1O95477 MIR4674-201ENST00000582457 87 ntBASIC15.61■□□□□ 0.09
ABCA1O95477 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC15.61■□□□□ 0.09
ABCA1O95477 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC15.61■□□□□ 0.09
ABCA1O95477 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.61■□□□□ 0.09
ABCA1O95477 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC15.61■□□□□ 0.09
ABCA1O95477 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 AC104417.2-201ENST00000562989 1793 ntBASIC15.61■□□□□ 0.09
ABCA1O95477 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC15.61■□□□□ 0.09
ABCA1O95477 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA1O95477 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms