Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC31.93■■■□□ 2.7
CUX2O14529 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
CUX2O14529 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
CUX2O14529 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CUX2O14529 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC31.92■■■□□ 2.7
CUX2O14529 COX5A-206ENST00000568783 571 ntTSL 3 BASIC31.92■■■□□ 2.7
CUX2O14529 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CUX2O14529 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CUX2O14529 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC31.92■■■□□ 2.7
CUX2O14529 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
CUX2O14529 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CUX2O14529 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CUX2O14529 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
CUX2O14529 AC009237.14-201ENST00000609975 1594 ntBASIC31.92■■■□□ 2.7
CUX2O14529 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
CUX2O14529 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC31.91■■■□□ 2.7
CUX2O14529 DUX4L17-201ENST00000557360 1267 ntBASIC31.91■■■□□ 2.7
CUX2O14529 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX2O14529 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX2O14529 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC31.91■■■□□ 2.7
CUX2O14529 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX2O14529 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX2O14529 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CUX2O14529 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC31.91■■■□□ 2.7
CUX2O14529 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
CUX2O14529 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC31.91■■■□□ 2.7
CUX2O14529 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC31.9■■■□□ 2.7
CUX2O14529 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CUX2O14529 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
CUX2O14529 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC31.9■■■□□ 2.7
CUX2O14529 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CUX2O14529 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CUX2O14529 ANKRD18DP-204ENST00000455355 1975 ntBASIC31.9■■■□□ 2.7
CUX2O14529 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC31.9■■■□□ 2.7
CUX2O14529 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC31.9■■■□□ 2.7
CUX2O14529 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC31.9■■■□□ 2.7
CUX2O14529 AC020907.5-201ENST00000624372 1936 ntBASIC31.9■■■□□ 2.7
CUX2O14529 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CUX2O14529 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC31.89■■■□□ 2.7
CUX2O14529 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC31.89■■■□□ 2.7
CUX2O14529 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC31.89■■■□□ 2.7
CUX2O14529 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC31.89■■■□□ 2.7
CUX2O14529 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC31.89■■■□□ 2.7
CUX2O14529 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CUX2O14529 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CUX2O14529 MED16-201ENST00000269814 1199 ntTSL 5 BASIC31.89■■■□□ 2.7
CUX2O14529 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
CUX2O14529 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
CUX2O14529 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC31.89■■■□□ 2.7
CUX2O14529 AC104390.1-201ENST00000555663 520 ntBASIC31.89■■■□□ 2.7
CUX2O14529 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CUX2O14529 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC31.89■■■□□ 2.7
CUX2O14529 AC025062.2-201ENST00000605477 670 ntBASIC31.89■■■□□ 2.7
CUX2O14529 AL691432.2-201ENST00000607222 2038 ntBASIC31.89■■■□□ 2.7
CUX2O14529 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC31.89■■■□□ 2.7
CUX2O14529 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
CUX2O14529 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
CUX2O14529 AL162377.1-201ENST00000618844 1793 ntBASIC31.88■■■□□ 2.69
CUX2O14529 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC31.88■■■□□ 2.69
CUX2O14529 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC31.88■■■□□ 2.69
CUX2O14529 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CUX2O14529 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC31.88■■■□□ 2.69
CUX2O14529 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CUX2O14529 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CUX2O14529 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC31.88■■■□□ 2.69
CUX2O14529 AC022494.1-201ENST00000466044 728 ntBASIC31.88■■■□□ 2.69
CUX2O14529 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CUX2O14529 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC31.88■■■□□ 2.69
CUX2O14529 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC31.88■■■□□ 2.69
CUX2O14529 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC31.88■■■□□ 2.69
CUX2O14529 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
CUX2O14529 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC31.88■■■□□ 2.69
CUX2O14529 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CUX2O14529 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC31.88■■■□□ 2.69
CUX2O14529 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC31.88■■■□□ 2.69
CUX2O14529 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
CUX2O14529 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
CUX2O14529 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
CUX2O14529 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
CUX2O14529 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC31.87■■■□□ 2.69
CUX2O14529 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC31.87■■■□□ 2.69
CUX2O14529 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC31.87■■■□□ 2.69
CUX2O14529 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC31.87■■■□□ 2.69
CUX2O14529 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC31.87■■■□□ 2.69
CUX2O14529 AC093028.1-201ENST00000622998 982 ntBASIC31.87■■■□□ 2.69
CUX2O14529 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC31.87■■■□□ 2.69
CUX2O14529 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CUX2O14529 DET1-207ENST00000564406 2315 ntTSL 2 BASIC31.87■■■□□ 2.69
CUX2O14529 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CUX2O14529 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
CUX2O14529 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CUX2O14529 RAB17-203ENST00000409576 466 ntTSL 3 BASIC31.86■■■□□ 2.69
CUX2O14529 AC009947.1-201ENST00000444350 727 ntBASIC31.86■■■□□ 2.69
CUX2O14529 RPL28-205ENST00000558131 444 ntTSL 5 BASIC31.86■■■□□ 2.69
CUX2O14529 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC31.86■■■□□ 2.69
CUX2O14529 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC31.86■■■□□ 2.69
CUX2O14529 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC31.86■■■□□ 2.69
CUX2O14529 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
CUX2O14529 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
CUX2O14529 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms