Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC15.92■□□□□ 0.14
SDCBPO00560 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC15.92■□□□□ 0.14
SDCBPO00560 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SDCBPO00560 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
SDCBPO00560 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC15.91■□□□□ 0.14
SDCBPO00560 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
SDCBPO00560 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
SDCBPO00560 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
SDCBPO00560 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.91■□□□□ 0.14
SDCBPO00560 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
SDCBPO00560 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
SDCBPO00560 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 ESRRAP1-201ENST00000400596 1257 ntBASIC15.91■□□□□ 0.14
SDCBPO00560 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC15.91■□□□□ 0.14
SDCBPO00560 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC15.91■□□□□ 0.14
SDCBPO00560 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
SDCBPO00560 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC15.91■□□□□ 0.14
SDCBPO00560 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC15.91■□□□□ 0.14
SDCBPO00560 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.91■□□□□ 0.14
SDCBPO00560 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
SDCBPO00560 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
SDCBPO00560 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
SDCBPO00560 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SDCBPO00560 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
SDCBPO00560 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
SDCBPO00560 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.9■□□□□ 0.14
SDCBPO00560 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC15.9■□□□□ 0.14
SDCBPO00560 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC15.9■□□□□ 0.14
SDCBPO00560 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC15.9■□□□□ 0.14
SDCBPO00560 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
SDCBPO00560 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC15.9■□□□□ 0.14
SDCBPO00560 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 F2R-202ENST00000505600 442 ntTSL 2 BASIC15.9■□□□□ 0.14
SDCBPO00560 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 AC233263.1-201ENST00000578059 224 ntBASIC15.9■□□□□ 0.14
SDCBPO00560 MTDHP1-201ENST00000605323 784 ntBASIC15.9■□□□□ 0.14
SDCBPO00560 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC15.9■□□□□ 0.14
SDCBPO00560 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.9■□□□□ 0.14
SDCBPO00560 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SDCBPO00560 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC15.89■□□□□ 0.14
SDCBPO00560 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
SDCBPO00560 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.14
SDCBPO00560 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SDCBPO00560 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
SDCBPO00560 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
SDCBPO00560 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SDCBPO00560 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 AC239809.2-201ENST00000415381 517 ntBASIC15.89■□□□□ 0.13
SDCBPO00560 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC15.89■□□□□ 0.13
SDCBPO00560 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.89■□□□□ 0.13
SDCBPO00560 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.89■□□□□ 0.13
SDCBPO00560 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SDCBPO00560 AL023875.1-201ENST00000640777 796 ntBASIC15.89■□□□□ 0.13
SDCBPO00560 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms