Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.1■□□□□ 0.65
CBX4O00257 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
CBX4O00257 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CBX4O00257 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.09■□□□□ 0.65
CBX4O00257 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.09■□□□□ 0.65
CBX4O00257 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.09■□□□□ 0.65
CBX4O00257 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.09■□□□□ 0.65
CBX4O00257 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.09■□□□□ 0.65
CBX4O00257 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
CBX4O00257 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
CBX4O00257 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.09■□□□□ 0.65
CBX4O00257 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CBX4O00257 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.09■□□□□ 0.65
CBX4O00257 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CBX4O00257 AC006333.2-201ENST00000607957 2099 ntBASIC19.09■□□□□ 0.65
CBX4O00257 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CBX4O00257 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CBX4O00257 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CBX4O00257 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.08■□□□□ 0.65
CBX4O00257 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
CBX4O00257 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CBX4O00257 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CBX4O00257 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CBX4O00257 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CBX4O00257 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CBX4O00257 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
CBX4O00257 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CBX4O00257 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CBX4O00257 RNF152P1-201ENST00000397754 604 ntBASIC19.08■□□□□ 0.64
CBX4O00257 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.08■□□□□ 0.64
CBX4O00257 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.08■□□□□ 0.64
CBX4O00257 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.08■□□□□ 0.64
CBX4O00257 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CBX4O00257 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.64
CBX4O00257 AC083906.6-201ENST00000641366 219 ntBASIC19.08■□□□□ 0.64
CBX4O00257 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CBX4O00257 AC138932.1-201ENST00000534164 6830 ntBASIC19.08■□□□□ 0.64
CBX4O00257 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CBX4O00257 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.08■□□□□ 0.64
CBX4O00257 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.08■□□□□ 0.64
CBX4O00257 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.64
CBX4O00257 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CBX4O00257 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.07■□□□□ 0.64
CBX4O00257 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.07■□□□□ 0.64
CBX4O00257 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.07■□□□□ 0.64
CBX4O00257 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 TSPY5P-201ENST00000426936 936 ntBASIC19.07■□□□□ 0.64
CBX4O00257 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.07■□□□□ 0.64
CBX4O00257 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.07■□□□□ 0.64
CBX4O00257 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.07■□□□□ 0.64
CBX4O00257 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.07■□□□□ 0.64
CBX4O00257 AL441883.1-201ENST00000566170 1045 ntBASIC19.07■□□□□ 0.64
CBX4O00257 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.07■□□□□ 0.64
CBX4O00257 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CBX4O00257 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.07■□□□□ 0.64
CBX4O00257 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 MIR564-202ENST00000385049 94 ntBASIC19.06■□□□□ 0.64
CBX4O00257 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CBX4O00257 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.06■□□□□ 0.64
CBX4O00257 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.06■□□□□ 0.64
CBX4O00257 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.06■□□□□ 0.64
CBX4O00257 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.06■□□□□ 0.64
CBX4O00257 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
CBX4O00257 AC024243.1-201ENST00000609234 778 ntBASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms