Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC32.35■■■□□ 2.77
CCDC88BA6NC98 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC32.35■■■□□ 2.77
CCDC88BA6NC98 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 POLI-202ENST00000406285 2030 ntTSL 2 BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 MIR574-201ENST00000385209 96 ntBASIC32.34■■■□□ 2.77
CCDC88BA6NC98 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 AP001005.1-201ENST00000571755 1248 ntBASIC32.34■■■□□ 2.77
CCDC88BA6NC98 AL773604.1-201ENST00000617417 272 ntBASIC32.34■■■□□ 2.77
CCDC88BA6NC98 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
CCDC88BA6NC98 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 AC018712.1-201ENST00000455767 687 ntBASIC32.33■■■□□ 2.77
CCDC88BA6NC98 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC32.33■■■□□ 2.77
CCDC88BA6NC98 EFS-203ENST00000429593 2610 ntTSL 2 BASIC32.32■■■□□ 2.77
CCDC88BA6NC98 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 NFYC-AS1-201ENST00000606277 1687 ntBASIC32.32■■■□□ 2.76
CCDC88BA6NC98 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 AC243591.1-201ENST00000452967 1364 ntBASIC32.32■■■□□ 2.76
CCDC88BA6NC98 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC32.32■■■□□ 2.76
CCDC88BA6NC98 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC32.31■■■□□ 2.76
CCDC88BA6NC98 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC32.31■■■□□ 2.76
CCDC88BA6NC98 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
CCDC88BA6NC98 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
CCDC88BA6NC98 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
CCDC88BA6NC98 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC32.31■■■□□ 2.76
CCDC88BA6NC98 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC32.31■■■□□ 2.76
CCDC88BA6NC98 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
CCDC88BA6NC98 AF228730.7-201ENST00000641842 219 ntBASIC32.31■■■□□ 2.76
CCDC88BA6NC98 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC32.31■■■□□ 2.76
CCDC88BA6NC98 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC32.31■■■□□ 2.76
CCDC88BA6NC98 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CCDC88BA6NC98 PMS2P1-201ENST00000431037 1228 ntBASIC32.3■■■□□ 2.76
CCDC88BA6NC98 KRT18P67-201ENST00000432816 1264 ntBASIC32.3■■■□□ 2.76
CCDC88BA6NC98 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC32.3■■■□□ 2.76
CCDC88BA6NC98 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CCDC88BA6NC98 CCS-201ENST00000310190 942 ntTSL 5 BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
CCDC88BA6NC98 AC114341.1-201ENST00000618070 349 ntBASIC32.29■■■□□ 2.76
CCDC88BA6NC98 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 AP000593.1-201ENST00000393668 712 ntBASIC32.28■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms