Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 C1QBPP2-201ENST00000528754 825 ntBASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC39Q9UFE4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
CCDC39Q9UFE4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.64■■□□□ 1.06
CCDC39Q9UFE4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.64■■□□□ 1.06
CCDC39Q9UFE4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC39Q9UFE4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC39Q9UFE4 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC39Q9UFE4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 ABALON-201ENST00000629058 1903 ntBASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC39Q9UFE4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 AL512353.2-201ENST00000448759 1962 ntBASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC39Q9UFE4 AC012313.1-201ENST00000593393 3059 ntBASIC21.61■■□□□ 1.05
CCDC39Q9UFE4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC39Q9UFE4 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CCDC39Q9UFE4 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC21.61■■□□□ 1.05
CCDC39Q9UFE4 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CCDC39Q9UFE4 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC39Q9UFE4 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC39Q9UFE4 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.61■■□□□ 1.05
CCDC39Q9UFE4 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC39Q9UFE4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms