Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 KRT18P29-201ENST00000397031 1267 ntBASIC16.72■□□□□ 0.27
VSX1Q9NZR4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 SPIB-206ENST00000596074 847 ntTSL 2 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.72■□□□□ 0.27
VSX1Q9NZR4 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 BICD1-207ENST00000551848 1962 ntBASIC16.71■□□□□ 0.27
VSX1Q9NZR4 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 MESTP1-201ENST00000404287 994 ntBASIC16.71■□□□□ 0.27
VSX1Q9NZR4 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.71■□□□□ 0.27
VSX1Q9NZR4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 TSPY20P-201ENST00000450910 630 ntBASIC16.71■□□□□ 0.27
VSX1Q9NZR4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 FSCN1P1-201ENST00000568912 1481 ntBASIC16.71■□□□□ 0.27
VSX1Q9NZR4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.71■□□□□ 0.27
VSX1Q9NZR4 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.71■□□□□ 0.26
VSX1Q9NZR4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.71■□□□□ 0.26
VSX1Q9NZR4 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 AP000692.2-201ENST00000608391 879 ntBASIC16.7■□□□□ 0.26
VSX1Q9NZR4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VSX1Q9NZR4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms