Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.12■□□□□ 0.33
DDX28Q9NUL7 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 AL121906.2-201ENST00000621597 723 ntBASIC17.12■□□□□ 0.33
DDX28Q9NUL7 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.12■□□□□ 0.33
DDX28Q9NUL7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 AC124283.5-201ENST00000624661 1809 ntBASIC17.11■□□□□ 0.33
DDX28Q9NUL7 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
DDX28Q9NUL7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms