Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
MMP28Q9H239 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MMP28Q9H239 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.23
MMP28Q9H239 OR6D1P-202ENST00000641007 5290 ntBASIC16.52■□□□□ 0.23
MMP28Q9H239 AC135776.1-201ENST00000319817 2481 ntBASIC16.52■□□□□ 0.23
MMP28Q9H239 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.51■□□□□ 0.23
MMP28Q9H239 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
MMP28Q9H239 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 ANO7L1-203ENST00000602586 1720 ntBASIC16.51■□□□□ 0.23
MMP28Q9H239 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
MMP28Q9H239 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
MMP28Q9H239 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC16.51■□□□□ 0.23
MMP28Q9H239 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.51■□□□□ 0.23
MMP28Q9H239 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC16.51■□□□□ 0.23
MMP28Q9H239 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC16.51■□□□□ 0.23
MMP28Q9H239 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
MMP28Q9H239 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.51■□□□□ 0.23
MMP28Q9H239 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.51■□□□□ 0.23
MMP28Q9H239 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.51■□□□□ 0.23
MMP28Q9H239 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.51■□□□□ 0.23
MMP28Q9H239 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.51■□□□□ 0.23
MMP28Q9H239 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
MMP28Q9H239 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.51■□□□□ 0.23
MMP28Q9H239 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MMP28Q9H239 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
MMP28Q9H239 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
MMP28Q9H239 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
MMP28Q9H239 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
MMP28Q9H239 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
MMP28Q9H239 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.5■□□□□ 0.23
MMP28Q9H239 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.5■□□□□ 0.23
MMP28Q9H239 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
MMP28Q9H239 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.5■□□□□ 0.23
MMP28Q9H239 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.5■□□□□ 0.23
MMP28Q9H239 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
MMP28Q9H239 SLC29A4P1-201ENST00000398760 971 ntBASIC16.5■□□□□ 0.23
MMP28Q9H239 LSM12P1-201ENST00000411836 588 ntBASIC16.5■□□□□ 0.23
MMP28Q9H239 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC16.5■□□□□ 0.23
MMP28Q9H239 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC16.5■□□□□ 0.23
MMP28Q9H239 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.5■□□□□ 0.23
MMP28Q9H239 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC16.5■□□□□ 0.23
MMP28Q9H239 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
MMP28Q9H239 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.5■□□□□ 0.23
MMP28Q9H239 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.5■□□□□ 0.23
MMP28Q9H239 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.5■□□□□ 0.23
MMP28Q9H239 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
MMP28Q9H239 AC018695.7-201ENST00000624587 2492 ntBASIC16.5■□□□□ 0.23
MMP28Q9H239 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
MMP28Q9H239 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
MMP28Q9H239 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
MMP28Q9H239 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.49■□□□□ 0.23
MMP28Q9H239 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
MMP28Q9H239 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
MMP28Q9H239 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
MMP28Q9H239 KRT16P6-202ENST00000425692 1426 ntBASIC16.49■□□□□ 0.23
MMP28Q9H239 GUSBP6-202ENST00000438529 1198 ntBASIC16.49■□□□□ 0.23
MMP28Q9H239 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms