Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 AC092296.2-201ENST00000589470 999 ntBASIC13.08□□□□□ -0.32
VPS25Q9BRG1 CR559946.2-201ENST00000623684 991 ntBASIC13.08□□□□□ -0.32
VPS25Q9BRG1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 USF2-207ENST00000595068 1612 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 AC026202.3-201ENST00000600805 1127 ntBASIC13.07□□□□□ -0.32
VPS25Q9BRG1 AC007029.1-201ENST00000604183 313 ntBASIC13.07□□□□□ -0.32
VPS25Q9BRG1 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
VPS25Q9BRG1 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 CICP4-201ENST00000447359 2812 ntBASIC13.06□□□□□ -0.32
VPS25Q9BRG1 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
VPS25Q9BRG1 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms