Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRERF1Q96PN7 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 LTB4R2-202ENST00000528054 3092 ntBASIC21.69■■□□□ 1.06
TRERF1Q96PN7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.69■■□□□ 1.06
TRERF1Q96PN7 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 KRT8P3-201ENST00000519669 1449 ntBASIC21.68■■□□□ 1.06
TRERF1Q96PN7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRERF1Q96PN7 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 IER3-202ENST00000376377 1350 ntBASIC21.67■■□□□ 1.06
TRERF1Q96PN7 AC005332.1-201ENST00000577698 1310 ntBASIC21.67■■□□□ 1.06
TRERF1Q96PN7 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 HYMAI.1-201ENST00000620949 238 ntBASIC21.67■■□□□ 1.06
TRERF1Q96PN7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRERF1Q96PN7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 TEX21P-204ENST00000641479 1693 ntBASIC21.66■■□□□ 1.06
TRERF1Q96PN7 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 AC036111.1-201ENST00000533973 1582 ntBASIC21.66■■□□□ 1.06
TRERF1Q96PN7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 SPDYE15P-201ENST00000424157 909 ntBASIC21.66■■□□□ 1.06
TRERF1Q96PN7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms