Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SKA1Q96BD8 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SKA1Q96BD8 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.19■□□□□ 0.66
SKA1Q96BD8 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SKA1Q96BD8 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SKA1Q96BD8 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.19■□□□□ 0.66
SKA1Q96BD8 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 AL160286.2-201ENST00000567150 934 ntBASIC19.18■□□□□ 0.66
SKA1Q96BD8 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 AC006011.2-201ENST00000621313 1158 ntBASIC19.18■□□□□ 0.66
SKA1Q96BD8 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.18■□□□□ 0.66
SKA1Q96BD8 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SKA1Q96BD8 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 AC091390.4-202ENST00000476426 537 ntBASIC19.17■□□□□ 0.66
SKA1Q96BD8 WWOX-216ENST00000569818 525 ntBASIC19.17■□□□□ 0.66
SKA1Q96BD8 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 AL031432.5-201ENST00000641059 760 ntBASIC19.17■□□□□ 0.66
SKA1Q96BD8 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SKA1Q96BD8 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.17■□□□□ 0.66
SKA1Q96BD8 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 RNF152P1-201ENST00000397754 604 ntBASIC19.16■□□□□ 0.66
SKA1Q96BD8 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 AC022616.7-201ENST00000525383 220 ntBASIC19.16■□□□□ 0.66
SKA1Q96BD8 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SKA1Q96BD8 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms