Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 AC005521.1-201ENST00000393351 872 ntBASIC19.17■□□□□ 0.66
RTL3Q8N8U3 LIN28AP1-201ENST00000429574 405 ntBASIC19.17■□□□□ 0.66
RTL3Q8N8U3 AL137013.1-201ENST00000432946 1228 ntBASIC19.17■□□□□ 0.66
RTL3Q8N8U3 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 AC009947.2-201ENST00000444014 672 ntBASIC19.17■□□□□ 0.66
RTL3Q8N8U3 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RTL3Q8N8U3 AC073508.3-201ENST00000619697 1419 ntBASIC19.17■□□□□ 0.66
RTL3Q8N8U3 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 ATP5G1P1-201ENST00000448724 379 ntBASIC19.16■□□□□ 0.66
RTL3Q8N8U3 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 KRT18P41-201ENST00000518924 1277 ntBASIC19.16■□□□□ 0.66
RTL3Q8N8U3 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 AC141257.4-201ENST00000634557 245 ntBASIC19.16■□□□□ 0.66
RTL3Q8N8U3 AC136944.6-201ENST00000634818 245 ntBASIC19.16■□□□□ 0.66
RTL3Q8N8U3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 AC004408.2-201ENST00000623613 2777 ntBASIC19.16■□□□□ 0.66
RTL3Q8N8U3 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.16■□□□□ 0.66
RTL3Q8N8U3 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.16■□□□□ 0.66
RTL3Q8N8U3 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 NEK4P2-201ENST00000580004 1012 ntBASIC19.15■□□□□ 0.66
RTL3Q8N8U3 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RTL3Q8N8U3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.14■□□□□ 0.66
RTL3Q8N8U3 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
RTL3Q8N8U3 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.14■□□□□ 0.66
RTL3Q8N8U3 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RTL3Q8N8U3 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RTL3Q8N8U3 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RTL3Q8N8U3 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
RTL3Q8N8U3 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
RTL3Q8N8U3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.14■□□□□ 0.65
RTL3Q8N8U3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
RTL3Q8N8U3 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.65
RTL3Q8N8U3 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
RTL3Q8N8U3 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.14■□□□□ 0.65
RTL3Q8N8U3 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.14■□□□□ 0.65
RTL3Q8N8U3 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.14■□□□□ 0.65
RTL3Q8N8U3 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.14■□□□□ 0.65
RTL3Q8N8U3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms