Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VRK3Q8IV63 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.28■□□□□ 0.52
VRK3Q8IV63 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.27■□□□□ 0.52
VRK3Q8IV63 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VRK3Q8IV63 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VRK3Q8IV63 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
VRK3Q8IV63 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VRK3Q8IV63 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.27■□□□□ 0.52
VRK3Q8IV63 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.27■□□□□ 0.52
VRK3Q8IV63 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.27■□□□□ 0.52
VRK3Q8IV63 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.27■□□□□ 0.52
VRK3Q8IV63 AC126763.1-201ENST00000552015 2118 ntBASIC18.27■□□□□ 0.52
VRK3Q8IV63 WWOX-216ENST00000569818 525 ntBASIC18.27■□□□□ 0.52
VRK3Q8IV63 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VRK3Q8IV63 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.27■□□□□ 0.52
VRK3Q8IV63 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VRK3Q8IV63 AC104581.1-202ENST00000635932 2618 ntBASIC18.27■□□□□ 0.51
VRK3Q8IV63 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VRK3Q8IV63 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VRK3Q8IV63 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VRK3Q8IV63 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.26■□□□□ 0.51
VRK3Q8IV63 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 AC005082.1-201ENST00000413042 2259 ntBASIC18.26■□□□□ 0.51
VRK3Q8IV63 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VRK3Q8IV63 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VRK3Q8IV63 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VRK3Q8IV63 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.24■□□□□ 0.51
VRK3Q8IV63 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.24■□□□□ 0.51
VRK3Q8IV63 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VRK3Q8IV63 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.24■□□□□ 0.51
VRK3Q8IV63 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.24■□□□□ 0.51
VRK3Q8IV63 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms