Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 PMS2P2-201ENST00000425039 1128 ntBASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 AC022898.2-201ENST00000616822 1312 ntBASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 FAM220CP-201ENST00000395253 831 ntBASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 FICD-205ENST00000552758 603 ntTSL 2 BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 IGHV3OR16-7-201ENST00000604106 360 ntBASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 AC055717.3-201ENST00000622967 595 ntBASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
CCDC88AQ3V6T2 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC88AQ3V6T2 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
CCDC88AQ3V6T2 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC22.89■■□□□ 1.26
CCDC88AQ3V6T2 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CCDC88AQ3V6T2 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 RNPS1P1-201ENST00000507437 918 ntBASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
CCDC88AQ3V6T2 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 BX842568.4-201ENST00000421222 227 ntBASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 VENTXP7-201ENST00000475503 772 ntBASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 POLI-202ENST00000406285 2030 ntTSL 2 BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
CCDC88AQ3V6T2 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 MED22-202ENST00000371999 987 ntTSL 3 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 AC010240.3-201ENST00000607688 395 ntBASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CCDC88AQ3V6T2 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 AC139887.3-201ENST00000568585 713 ntBASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CCDC88AQ3V6T2 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CCDC88AQ3V6T2 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC22.85■■□□□ 1.25
CCDC88AQ3V6T2 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC22.85■■□□□ 1.25
CCDC88AQ3V6T2 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC22.85■■□□□ 1.25
CCDC88AQ3V6T2 AC112497.1-201ENST00000624824 639 ntBASIC22.85■■□□□ 1.25
CCDC88AQ3V6T2 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC22.85■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms