Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 AC120498.9-201ENST00000339021 3867 ntBASIC17.32■□□□□ 0.36
RNF4P78317 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 MIR564-202ENST00000385049 94 ntBASIC17.32■□□□□ 0.36
RNF4P78317 RNF152P1-201ENST00000397754 604 ntBASIC17.32■□□□□ 0.36
RNF4P78317 MIR1224-201ENST00000408193 85 ntBASIC17.32■□□□□ 0.36
RNF4P78317 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.32■□□□□ 0.36
RNF4P78317 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.32■□□□□ 0.36
RNF4P78317 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.32■□□□□ 0.36
RNF4P78317 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.32■□□□□ 0.36
RNF4P78317 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.32■□□□□ 0.36
RNF4P78317 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.32■□□□□ 0.36
RNF4P78317 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RNF4P78317 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF4P78317 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
RNF4P78317 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF4P78317 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF4P78317 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
RNF4P78317 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF4P78317 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF4P78317 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.31■□□□□ 0.36
RNF4P78317 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF4P78317 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF4P78317 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF4P78317 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF4P78317 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF4P78317 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF4P78317 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF4P78317 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.31■□□□□ 0.36
RNF4P78317 TSPY5P-201ENST00000426936 936 ntBASIC17.31■□□□□ 0.36
RNF4P78317 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF4P78317 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF4P78317 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.31■□□□□ 0.36
RNF4P78317 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.31■□□□□ 0.36
RNF4P78317 AC010331.1-201ENST00000611423 582 ntBASIC17.31■□□□□ 0.36
RNF4P78317 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF4P78317 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
RNF4P78317 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF4P78317 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RNF4P78317 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 AC006333.2-201ENST00000607957 2099 ntBASIC17.3■□□□□ 0.36
RNF4P78317 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF4P78317 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.3■□□□□ 0.36
RNF4P78317 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF4P78317 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF4P78317 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
RNF4P78317 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.3■□□□□ 0.36
RNF4P78317 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF4P78317 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.3■□□□□ 0.36
RNF4P78317 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.3■□□□□ 0.36
RNF4P78317 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.3■□□□□ 0.36
RNF4P78317 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.3■□□□□ 0.36
RNF4P78317 AL441883.1-201ENST00000566170 1045 ntBASIC17.3■□□□□ 0.36
RNF4P78317 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.3■□□□□ 0.36
RNF4P78317 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
RNF4P78317 MTMR9LP-203ENST00000426597 1545 ntBASIC17.3■□□□□ 0.36
RNF4P78317 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.3■□□□□ 0.36
RNF4P78317 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF4P78317 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF4P78317 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF4P78317 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF4P78317 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF4P78317 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 AL357033.4-201ENST00000617703 1807 ntBASIC17.29■□□□□ 0.36
RNF4P78317 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
RNF4P78317 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms