Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 UPF3AP3-201ENST00000420996 769 ntBASIC16.32■□□□□ 0.2
COL8A1P27658 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL8A1P27658 AC091607.1-201ENST00000490318 1060 ntBASIC16.32■□□□□ 0.2
COL8A1P27658 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL8A1P27658 PGAM5P1-201ENST00000518923 814 ntBASIC16.32■□□□□ 0.2
COL8A1P27658 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.32■□□□□ 0.2
COL8A1P27658 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.32■□□□□ 0.2
COL8A1P27658 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
COL8A1P27658 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL8A1P27658 AC007225.1-201ENST00000566331 1836 ntBASIC16.32■□□□□ 0.2
COL8A1P27658 AC139887.3-201ENST00000568585 713 ntBASIC16.32■□□□□ 0.2
COL8A1P27658 AP005901.3-202ENST00000581653 237 ntBASIC16.32■□□□□ 0.2
COL8A1P27658 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.32■□□□□ 0.2
COL8A1P27658 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL8A1P27658 MIR7706-201ENST00000613747 67 ntBASIC16.32■□□□□ 0.2
COL8A1P27658 AC112497.1-201ENST00000624824 639 ntBASIC16.32■□□□□ 0.2
COL8A1P27658 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.32■□□□□ 0.2
COL8A1P27658 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL8A1P27658 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL8A1P27658 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
COL8A1P27658 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.31■□□□□ 0.2
COL8A1P27658 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.31■□□□□ 0.2
COL8A1P27658 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL8A1P27658 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.31■□□□□ 0.2
COL8A1P27658 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.31■□□□□ 0.2
COL8A1P27658 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.31■□□□□ 0.2
COL8A1P27658 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.31■□□□□ 0.2
COL8A1P27658 AL390719.2-201ENST00000606993 987 ntBASIC16.31■□□□□ 0.2
COL8A1P27658 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
COL8A1P27658 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.31■□□□□ 0.2
COL8A1P27658 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL8A1P27658 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.3■□□□□ 0.2
COL8A1P27658 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
COL8A1P27658 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COL8A1P27658 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COL8A1P27658 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.3■□□□□ 0.2
COL8A1P27658 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.3■□□□□ 0.2
COL8A1P27658 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.3■□□□□ 0.2
COL8A1P27658 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.3■□□□□ 0.2
COL8A1P27658 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL8A1P27658 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL8A1P27658 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.3■□□□□ 0.2
COL8A1P27658 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC16.3■□□□□ 0.2
COL8A1P27658 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL8A1P27658 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL8A1P27658 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.29■□□□□ 0.2
COL8A1P27658 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
COL8A1P27658 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.29■□□□□ 0.2
COL8A1P27658 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
COL8A1P27658 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.29■□□□□ 0.2
COL8A1P27658 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.29■□□□□ 0.2
COL8A1P27658 MINOS1P3-201ENST00000457048 203 ntBASIC16.29■□□□□ 0.2
COL8A1P27658 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL8A1P27658 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
COL8A1P27658 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.29■□□□□ 0.2
COL8A1P27658 MIR3180-5-201ENST00000583743 153 ntBASIC16.29■□□□□ 0.2
COL8A1P27658 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.29■□□□□ 0.2
COL8A1P27658 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.29■□□□□ 0.2
COL8A1P27658 AL592071.1-201ENST00000611956 408 ntBASIC16.29■□□□□ 0.2
COL8A1P27658 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms