Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL671277.2-201ENST00000458060 996 ntBASIC19.73■□□□□ 0.75
BDNFP23560 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.73■□□□□ 0.75
BDNFP23560 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
BDNFP23560 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
BDNFP23560 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.73■□□□□ 0.75
BDNFP23560 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BDNFP23560 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
BDNFP23560 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BDNFP23560 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
BDNFP23560 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.72■□□□□ 0.75
BDNFP23560 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
BDNFP23560 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
BDNFP23560 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
BDNFP23560 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
BDNFP23560 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
BDNFP23560 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.72■□□□□ 0.75
BDNFP23560 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.72■□□□□ 0.75
BDNFP23560 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.72■□□□□ 0.75
BDNFP23560 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
BDNFP23560 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
BDNFP23560 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
BDNFP23560 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.72■□□□□ 0.75
BDNFP23560 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.72■□□□□ 0.75
BDNFP23560 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
BDNFP23560 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
BDNFP23560 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 RASA4DP-201ENST00000460726 1199 ntBASIC19.71■□□□□ 0.75
BDNFP23560 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.71■□□□□ 0.75
BDNFP23560 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 AL357033.4-201ENST00000617703 1807 ntBASIC19.71■□□□□ 0.75
BDNFP23560 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.71■□□□□ 0.75
BDNFP23560 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
BDNFP23560 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 AC120498.9-201ENST00000339021 3867 ntBASIC19.71■□□□□ 0.75
BDNFP23560 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.71■□□□□ 0.75
BDNFP23560 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
BDNFP23560 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
BDNFP23560 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.7■□□□□ 0.74
BDNFP23560 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.7■□□□□ 0.74
BDNFP23560 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.7■□□□□ 0.74
BDNFP23560 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BDNFP23560 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
BDNFP23560 AC034236.2-201ENST00000606662 1610 ntBASIC19.7■□□□□ 0.74
BDNFP23560 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.7■□□□□ 0.74
BDNFP23560 AC034232.1-201ENST00000506026 1064 ntBASIC19.7■□□□□ 0.74
BDNFP23560 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
BDNFP23560 HYMAI.1-201ENST00000620949 238 ntBASIC19.7■□□□□ 0.74
BDNFP23560 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
BDNFP23560 AC006333.2-201ENST00000607957 2099 ntBASIC19.7■□□□□ 0.74
BDNFP23560 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.7■□□□□ 0.74
BDNFP23560 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.7■□□□□ 0.74
BDNFP23560 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BDNFP23560 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
BDNFP23560 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms