Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
XRCC1P18887 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
XRCC1P18887 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.67■□□□□ 0.58
XRCC1P18887 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
XRCC1P18887 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
XRCC1P18887 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
XRCC1P18887 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.66■□□□□ 0.58
XRCC1P18887 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
XRCC1P18887 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.66■□□□□ 0.58
XRCC1P18887 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
XRCC1P18887 AC113347.1-201ENST00000413321 391 ntBASIC18.66■□□□□ 0.58
XRCC1P18887 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 SLC25A3P1-201ENST00000443844 931 ntBASIC18.66■□□□□ 0.58
XRCC1P18887 CCR12P-201ENST00000446203 998 ntBASIC18.66■□□□□ 0.58
XRCC1P18887 CA15P1-201ENST00000481698 905 ntBASIC18.66■□□□□ 0.58
XRCC1P18887 PRSS44-201ENST00000515154 1146 ntBASIC18.66■□□□□ 0.58
XRCC1P18887 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.66■□□□□ 0.58
XRCC1P18887 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
XRCC1P18887 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.66■□□□□ 0.58
XRCC1P18887 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.66■□□□□ 0.58
XRCC1P18887 AC116562.4-202ENST00000641738 218 ntBASIC18.66■□□□□ 0.58
XRCC1P18887 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC1P18887 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC1P18887 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC1P18887 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC1P18887 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
XRCC1P18887 LTB4R2-202ENST00000528054 3092 ntBASIC18.65■□□□□ 0.58
XRCC1P18887 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC1P18887 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.65■□□□□ 0.58
XRCC1P18887 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
XRCC1P18887 AC092865.7-201ENST00000641832 219 ntBASIC18.65■□□□□ 0.58
XRCC1P18887 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
XRCC1P18887 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.65■□□□□ 0.58
XRCC1P18887 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC1P18887 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC1P18887 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC1P18887 KRT8P11-201ENST00000409686 1436 ntBASIC18.65■□□□□ 0.58
XRCC1P18887 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC1P18887 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.65■□□□□ 0.58
XRCC1P18887 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC1P18887 PCDHB18P-201ENST00000524813 2368 ntBASIC18.64■□□□□ 0.58
XRCC1P18887 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.64■□□□□ 0.58
XRCC1P18887 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
XRCC1P18887 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
XRCC1P18887 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
XRCC1P18887 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.64■□□□□ 0.58
XRCC1P18887 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
XRCC1P18887 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.64■□□□□ 0.57
XRCC1P18887 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
XRCC1P18887 AC005521.1-201ENST00000393351 872 ntBASIC18.64■□□□□ 0.57
XRCC1P18887 TSPY17P-201ENST00000450329 467 ntBASIC18.64■□□□□ 0.57
XRCC1P18887 ECEL1P2-202ENST00000465689 757 ntBASIC18.64■□□□□ 0.57
XRCC1P18887 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.64■□□□□ 0.57
XRCC1P18887 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.64■□□□□ 0.57
XRCC1P18887 AL023803.3-201ENST00000615559 522 ntBASIC18.64■□□□□ 0.57
XRCC1P18887 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms