Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PRKNO60260 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.41■□□□□ 0.38
PRKNO60260 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PRKNO60260 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PRKNO60260 MCCD1P1-208ENST00000445732 328 ntBASIC17.41■□□□□ 0.38
PRKNO60260 AL049597.2-201ENST00000565575 961 ntBASIC17.41■□□□□ 0.38
PRKNO60260 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PRKNO60260 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PRKNO60260 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PRKNO60260 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PRKNO60260 AC018445.3-201ENST00000624177 1945 ntBASIC17.41■□□□□ 0.38
PRKNO60260 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.4■□□□□ 0.38
PRKNO60260 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.4■□□□□ 0.38
PRKNO60260 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.4■□□□□ 0.38
PRKNO60260 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
PRKNO60260 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
PRKNO60260 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 KRT8P32-201ENST00000512863 1461 ntBASIC17.4■□□□□ 0.38
PRKNO60260 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 AK4P3-201ENST00000418260 669 ntBASIC17.4■□□□□ 0.38
PRKNO60260 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 COX11P1-201ENST00000489116 835 ntBASIC17.4■□□□□ 0.38
PRKNO60260 YBX1P2-201ENST00000489612 999 ntBASIC17.4■□□□□ 0.38
PRKNO60260 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.4■□□□□ 0.38
PRKNO60260 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
PRKNO60260 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.4■□□□□ 0.38
PRKNO60260 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.4■□□□□ 0.38
PRKNO60260 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.4■□□□□ 0.38
PRKNO60260 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.4■□□□□ 0.38
PRKNO60260 AC011558.1-201ENST00000623459 338 ntBASIC17.4■□□□□ 0.38
PRKNO60260 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.4■□□□□ 0.38
PRKNO60260 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.4■□□□□ 0.38
PRKNO60260 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.4■□□□□ 0.38
PRKNO60260 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PRKNO60260 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PRKNO60260 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.4■□□□□ 0.38
PRKNO60260 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.39■□□□□ 0.38
PRKNO60260 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PRKNO60260 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.39■□□□□ 0.37
PRKNO60260 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.39■□□□□ 0.37
PRKNO60260 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
PRKNO60260 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
PRKNO60260 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.39■□□□□ 0.37
PRKNO60260 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.39■□□□□ 0.37
PRKNO60260 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.39■□□□□ 0.37
PRKNO60260 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.39■□□□□ 0.37
PRKNO60260 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.39■□□□□ 0.37
PRKNO60260 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.39■□□□□ 0.37
PRKNO60260 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.39■□□□□ 0.37
PRKNO60260 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 AL441883.1-201ENST00000566170 1045 ntBASIC17.39■□□□□ 0.37
PRKNO60260 AL512604.3-201ENST00000569583 964 ntBASIC17.39■□□□□ 0.37
PRKNO60260 WWOX-216ENST00000569818 525 ntBASIC17.39■□□□□ 0.37
PRKNO60260 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.39■□□□□ 0.37
PRKNO60260 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PRKNO60260 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PRKNO60260 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.39■□□□□ 0.37
PRKNO60260 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PRKNO60260 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.38■□□□□ 0.37
PRKNO60260 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.38■□□□□ 0.37
PRKNO60260 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
PRKNO60260 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.38■□□□□ 0.37
PRKNO60260 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.38■□□□□ 0.37
PRKNO60260 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.38■□□□□ 0.37
PRKNO60260 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.38■□□□□ 0.37
PRKNO60260 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.38■□□□□ 0.37
PRKNO60260 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
PRKNO60260 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PRKNO60260 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms