Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 AC034232.1-201ENST00000506026 1064 ntBASIC19.82■□□□□ 0.76
CDH9Q9ULB4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.82■□□□□ 0.76
CDH9Q9ULB4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDH9Q9ULB4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 MTMR9LP-203ENST00000426597 1545 ntBASIC19.81■□□□□ 0.76
CDH9Q9ULB4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.81■□□□□ 0.76
CDH9Q9ULB4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 AL357033.4-201ENST00000617703 1807 ntBASIC19.81■□□□□ 0.76
CDH9Q9ULB4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
CDH9Q9ULB4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 AL031133.1-201ENST00000406807 723 ntBASIC19.8■□□□□ 0.76
CDH9Q9ULB4 SPDYE15P-201ENST00000424157 909 ntBASIC19.8■□□□□ 0.76
CDH9Q9ULB4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 AC006333.2-201ENST00000607957 2099 ntBASIC19.8■□□□□ 0.76
CDH9Q9ULB4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 Z98044.1-201ENST00000632503 1764 ntBASIC19.8■□□□□ 0.76
CDH9Q9ULB4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDH9Q9ULB4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 AL671277.2-201ENST00000458060 996 ntBASIC19.79■□□□□ 0.76
CDH9Q9ULB4 RASA4DP-201ENST00000460726 1199 ntBASIC19.79■□□□□ 0.76
CDH9Q9ULB4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 AC104390.1-201ENST00000555663 520 ntBASIC19.79■□□□□ 0.76
CDH9Q9ULB4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDH9Q9ULB4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.78■□□□□ 0.76
CDH9Q9ULB4 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDH9Q9ULB4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.78■□□□□ 0.76
CDH9Q9ULB4 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDH9Q9ULB4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CDH9Q9ULB4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CDH9Q9ULB4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms