Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
SIX2Q9NPC8 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SIX2Q9NPC8 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.14■□□□□ 0.82
SIX2Q9NPC8 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
SIX2Q9NPC8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 AL355355.2-201ENST00000442321 338 ntBASIC20.14■□□□□ 0.81
SIX2Q9NPC8 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 AP003071.4-201ENST00000562276 1284 ntBASIC20.14■□□□□ 0.81
SIX2Q9NPC8 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 TMEM191A-211ENST00000637163 1067 ntBASIC20.14■□□□□ 0.81
SIX2Q9NPC8 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SIX2Q9NPC8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 AC112777.1-201ENST00000540175 1423 ntBASIC20.13■□□□□ 0.81
SIX2Q9NPC8 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 CRYGFP-201ENST00000418459 633 ntBASIC20.13■□□□□ 0.81
SIX2Q9NPC8 TSPY7P-201ENST00000431358 1114 ntBASIC20.13■□□□□ 0.81
SIX2Q9NPC8 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 KRT18P41-201ENST00000518924 1277 ntBASIC20.13■□□□□ 0.81
SIX2Q9NPC8 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SIX2Q9NPC8 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 RBM17P1-201ENST00000453646 1190 ntBASIC20.12■□□□□ 0.81
SIX2Q9NPC8 CA15P1-201ENST00000481698 905 ntBASIC20.12■□□□□ 0.81
SIX2Q9NPC8 AP005242.2-201ENST00000580065 1175 ntBASIC20.12■□□□□ 0.81
SIX2Q9NPC8 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.12■□□□□ 0.81
SIX2Q9NPC8 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SIX2Q9NPC8 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms