Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SSU72Q9NP77 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SSU72Q9NP77 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SSU72Q9NP77 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SSU72Q9NP77 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.62■□□□□ 0.57
SSU72Q9NP77 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.62■□□□□ 0.57
SSU72Q9NP77 AC060766.5-201ENST00000590539 871 ntBASIC18.62■□□□□ 0.57
SSU72Q9NP77 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.62■□□□□ 0.57
SSU72Q9NP77 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 AL357033.4-201ENST00000617703 1807 ntBASIC18.62■□□□□ 0.57
SSU72Q9NP77 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SSU72Q9NP77 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.62■□□□□ 0.57
SSU72Q9NP77 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SSU72Q9NP77 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSU72Q9NP77 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.62■□□□□ 0.57
SSU72Q9NP77 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
SSU72Q9NP77 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSU72Q9NP77 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSU72Q9NP77 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSU72Q9NP77 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSU72Q9NP77 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SSU72Q9NP77 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SSU72Q9NP77 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SSU72Q9NP77 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSU72Q9NP77 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.61■□□□□ 0.57
SSU72Q9NP77 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SSU72Q9NP77 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SSU72Q9NP77 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.6■□□□□ 0.57
SSU72Q9NP77 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.6■□□□□ 0.57
SSU72Q9NP77 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.6■□□□□ 0.57
SSU72Q9NP77 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SSU72Q9NP77 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SSU72Q9NP77 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.6■□□□□ 0.57
SSU72Q9NP77 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.6■□□□□ 0.57
SSU72Q9NP77 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.6■□□□□ 0.57
SSU72Q9NP77 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 AC073111.5-205ENST00000641717 521 ntBASIC18.6■□□□□ 0.57
SSU72Q9NP77 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.6■□□□□ 0.57
SSU72Q9NP77 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SSU72Q9NP77 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.6■□□□□ 0.57
SSU72Q9NP77 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SSU72Q9NP77 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSU72Q9NP77 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSU72Q9NP77 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSU72Q9NP77 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSU72Q9NP77 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSU72Q9NP77 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SSU72Q9NP77 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 MYC-209ENST00000641252 345 ntBASIC18.59■□□□□ 0.57
SSU72Q9NP77 AC139713.2-201ENST00000641328 2723 ntBASIC18.59■□□□□ 0.57
SSU72Q9NP77 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SSU72Q9NP77 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SSU72Q9NP77 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms