Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 AL139288.1-201ENST00000623748 933 ntBASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 GPR89P-201ENST00000407924 1495 ntBASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.94■□□□□ 0.62
COL25A1Q9BXS0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 DUX4L27-201ENST00000554796 1261 ntBASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 AC004835.2-201ENST00000603762 682 ntBASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 AC020928.2-201ENST00000588717 2197 ntBASIC18.93■□□□□ 0.62
COL25A1Q9BXS0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 LAGE3P1-201ENST00000425356 484 ntBASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 AC018845.2-201ENST00000568326 409 ntBASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 AC005593.1-201ENST00000624894 515 ntBASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 AL358472.5-202ENST00000641448 1267 ntBASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL25A1Q9BXS0 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 KRT8P7-201ENST00000533003 1432 ntBASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 AC004945.1-201ENST00000416738 983 ntBASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 AC121338.2-201ENST00000622535 1744 ntBASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 AC112777.1-201ENST00000540175 1423 ntBASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL25A1Q9BXS0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL25A1Q9BXS0 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL25A1Q9BXS0 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL25A1Q9BXS0 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL25A1Q9BXS0 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
COL25A1Q9BXS0 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms