Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.11□□□□□ -0.31
VPS25Q9BRG1 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC13.11□□□□□ -0.31
VPS25Q9BRG1 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
VPS25Q9BRG1 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS25Q9BRG1 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
VPS25Q9BRG1 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
VPS25Q9BRG1 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
VPS25Q9BRG1 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC13.11□□□□□ -0.31
VPS25Q9BRG1 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 AC099063.4-201ENST00000641099 1602 ntBASIC13.1□□□□□ -0.31
VPS25Q9BRG1 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 PTENP1-202ENST00000532280 3996 ntBASIC13.1□□□□□ -0.31
VPS25Q9BRG1 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
VPS25Q9BRG1 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 AC067750.1-201ENST00000608826 6545 ntBASIC13.09□□□□□ -0.31
VPS25Q9BRG1 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 ECEL1P2-201ENST00000461596 1295 ntBASIC13.09□□□□□ -0.31
VPS25Q9BRG1 METRNL-202ENST00000570778 967 ntTSL 5 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
VPS25Q9BRG1 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.08□□□□□ -0.31
VPS25Q9BRG1 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
VPS25Q9BRG1 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.08□□□□□ -0.31
VPS25Q9BRG1 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.08□□□□□ -0.31
VPS25Q9BRG1 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
VPS25Q9BRG1 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
VPS25Q9BRG1 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.08□□□□□ -0.32
VPS25Q9BRG1 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms