Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.37■□□□□ 0.21
COL12A1Q99715 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
COL12A1Q99715 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL12A1Q99715 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
COL12A1Q99715 RNA5SP415-201ENST00000517246 115 ntBASIC16.37■□□□□ 0.21
COL12A1Q99715 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.37■□□□□ 0.21
COL12A1Q99715 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.37■□□□□ 0.21
COL12A1Q99715 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.36■□□□□ 0.21
COL12A1Q99715 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
COL12A1Q99715 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.36■□□□□ 0.21
COL12A1Q99715 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.36■□□□□ 0.21
COL12A1Q99715 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.36■□□□□ 0.21
COL12A1Q99715 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.36■□□□□ 0.21
COL12A1Q99715 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.36■□□□□ 0.21
COL12A1Q99715 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.36■□□□□ 0.21
COL12A1Q99715 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.36■□□□□ 0.21
COL12A1Q99715 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.36■□□□□ 0.21
COL12A1Q99715 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.36■□□□□ 0.21
COL12A1Q99715 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.36■□□□□ 0.21
COL12A1Q99715 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.36■□□□□ 0.21
COL12A1Q99715 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC16.36■□□□□ 0.21
COL12A1Q99715 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL12A1Q99715 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL12A1Q99715 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL12A1Q99715 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL12A1Q99715 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL12A1Q99715 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.35■□□□□ 0.21
COL12A1Q99715 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL12A1Q99715 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.35■□□□□ 0.21
COL12A1Q99715 NME1-207ENST00000480143 964 ntTSL 2 BASIC16.35■□□□□ 0.21
COL12A1Q99715 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.35■□□□□ 0.21
COL12A1Q99715 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC16.35■□□□□ 0.21
COL12A1Q99715 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL12A1Q99715 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL12A1Q99715 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL12A1Q99715 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL12A1Q99715 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL12A1Q99715 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.35■□□□□ 0.21
COL12A1Q99715 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.35■□□□□ 0.21
COL12A1Q99715 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.35■□□□□ 0.21
COL12A1Q99715 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.35■□□□□ 0.21
COL12A1Q99715 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.35■□□□□ 0.21
COL12A1Q99715 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL12A1Q99715 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL12A1Q99715 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
COL12A1Q99715 AL023284.2-201ENST00000405850 579 ntBASIC16.34■□□□□ 0.21
COL12A1Q99715 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.34■□□□□ 0.21
COL12A1Q99715 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.34■□□□□ 0.21
COL12A1Q99715 IGHV3-41-201ENST00000613121 348 ntBASIC16.34■□□□□ 0.21
COL12A1Q99715 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.34■□□□□ 0.21
COL12A1Q99715 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC16.34■□□□□ 0.21
COL12A1Q99715 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
COL12A1Q99715 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.34■□□□□ 0.21
COL12A1Q99715 AC009533.2-201ENST00000543664 586 ntBASIC16.34■□□□□ 0.21
COL12A1Q99715 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.34■□□□□ 0.21
COL12A1Q99715 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
COL12A1Q99715 MIR4469-201ENST00000583919 79 ntBASIC16.34■□□□□ 0.21
COL12A1Q99715 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.34■□□□□ 0.21
COL12A1Q99715 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 RN7SL606P-201ENST00000472779 293 ntBASIC16.34■□□□□ 0.21
COL12A1Q99715 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
COL12A1Q99715 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.34■□□□□ 0.21
COL12A1Q99715 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.34■□□□□ 0.21
COL12A1Q99715 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.34■□□□□ 0.21
COL12A1Q99715 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.34■□□□□ 0.21
COL12A1Q99715 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
COL12A1Q99715 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL12A1Q99715 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms