Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS35Q96QK1 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VPS35Q96QK1 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
VPS35Q96QK1 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 KRT8P45-201ENST00000414328 1447 ntBASIC18.6■□□□□ 0.57
VPS35Q96QK1 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VPS35Q96QK1 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VPS35Q96QK1 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
VPS35Q96QK1 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.6■□□□□ 0.57
VPS35Q96QK1 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 LIN28AP1-201ENST00000429574 405 ntBASIC18.6■□□□□ 0.57
VPS35Q96QK1 AL137013.1-201ENST00000432946 1228 ntBASIC18.6■□□□□ 0.57
VPS35Q96QK1 AC010203.1-204ENST00000548782 407 ntBASIC18.6■□□□□ 0.57
VPS35Q96QK1 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.6■□□□□ 0.57
VPS35Q96QK1 AL138966.2-201ENST00000621997 464 ntBASIC18.6■□□□□ 0.57
VPS35Q96QK1 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
VPS35Q96QK1 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS35Q96QK1 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS35Q96QK1 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
VPS35Q96QK1 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS35Q96QK1 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
VPS35Q96QK1 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS35Q96QK1 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS35Q96QK1 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 AC005521.1-201ENST00000393351 872 ntBASIC18.59■□□□□ 0.57
VPS35Q96QK1 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.59■□□□□ 0.57
VPS35Q96QK1 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS35Q96QK1 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VPS35Q96QK1 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS35Q96QK1 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.58■□□□□ 0.57
VPS35Q96QK1 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS35Q96QK1 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS35Q96QK1 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.58■□□□□ 0.57
VPS35Q96QK1 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
VPS35Q96QK1 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
VPS35Q96QK1 AC006333.2-201ENST00000607957 2099 ntBASIC18.58■□□□□ 0.57
VPS35Q96QK1 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.58■□□□□ 0.57
VPS35Q96QK1 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS35Q96QK1 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS35Q96QK1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS35Q96QK1 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.58■□□□□ 0.56
VPS35Q96QK1 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.58■□□□□ 0.56
VPS35Q96QK1 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS35Q96QK1 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS35Q96QK1 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS35Q96QK1 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS35Q96QK1 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS35Q96QK1 AL020996.1-203ENST00000536896 2307 ntBASIC18.58■□□□□ 0.56
VPS35Q96QK1 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS35Q96QK1 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
VPS35Q96QK1 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS35Q96QK1 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS35Q96QK1 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS35Q96QK1 BX323043.1-201ENST00000641006 1765 ntBASIC18.58■□□□□ 0.56
VPS35Q96QK1 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS35Q96QK1 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS35Q96QK1 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS35Q96QK1 AC008556.1-201ENST00000610908 2040 ntBASIC18.57■□□□□ 0.56
VPS35Q96QK1 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS35Q96QK1 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VPS35Q96QK1 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS35Q96QK1 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS35Q96QK1 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS35Q96QK1 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS35Q96QK1 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.57■□□□□ 0.56
VPS35Q96QK1 RCN1P1-201ENST00000400413 996 ntBASIC18.57■□□□□ 0.56
VPS35Q96QK1 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.57■□□□□ 0.56
VPS35Q96QK1 ATP5G1P1-201ENST00000448724 379 ntBASIC18.57■□□□□ 0.56
VPS35Q96QK1 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS35Q96QK1 AC092865.7-201ENST00000641832 219 ntBASIC18.57■□□□□ 0.56
VPS35Q96QK1 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms