Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 KRT8P7-201ENST00000533003 1432 ntBASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 HLA-J-201ENST00000462773 1622 ntBASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 DDT-203ENST00000403754 569 ntTSL 3 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 SYS1-203ENST00000414310 795 ntTSL 3 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 PPOX-214ENST00000535223 664 ntTSL 3 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 TEN1-204ENST00000588202 862 ntTSL 3 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 MTDHP5-201ENST00000598980 586 ntBASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC22.22■■□□□ 1.15
SMC1BQ8NDV3 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 AC092910.1-201ENST00000482027 1129 ntBASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 RNA5SP415-201ENST00000517246 115 ntBASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 AP001269.4-201ENST00000609611 512 ntBASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 ORC5-208ENST00000626700 344 ntTSL 3 BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SMC1BQ8NDV3 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 AL645939.2-201ENST00000427340 991 ntBASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 HLA-J-202ENST00000469281 1241 ntBASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 PBK-203ENST00000522944 1499 ntTSL 2 BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SMC1BQ8NDV3 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 MIR770-201ENST00000390219 98 ntBASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 AL353692.3-201ENST00000407031 1396 ntBASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SMC1BQ8NDV3 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 SNHG9-202ENST00000564014 471 ntBASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 AC007375.3-201ENST00000600936 2314 ntBASIC22.18■■□□□ 1.14
SMC1BQ8NDV3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms