Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.12■□□□□ 0.17
ABCA4P78363 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.12■□□□□ 0.17
ABCA4P78363 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.12■□□□□ 0.17
ABCA4P78363 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.12■□□□□ 0.17
ABCA4P78363 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.12■□□□□ 0.17
ABCA4P78363 AC112497.1-201ENST00000624824 639 ntBASIC16.12■□□□□ 0.17
ABCA4P78363 AC117500.6-201ENST00000624871 588 ntBASIC16.12■□□□□ 0.17
ABCA4P78363 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.12■□□□□ 0.17
ABCA4P78363 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.12■□□□□ 0.17
ABCA4P78363 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC16.12■□□□□ 0.17
ABCA4P78363 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ABCA4P78363 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
ABCA4P78363 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.12■□□□□ 0.17
ABCA4P78363 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.11■□□□□ 0.17
ABCA4P78363 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.11■□□□□ 0.17
ABCA4P78363 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.11■□□□□ 0.17
ABCA4P78363 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.11■□□□□ 0.17
ABCA4P78363 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
ABCA4P78363 TSPY19P-201ENST00000418461 509 ntBASIC16.11■□□□□ 0.17
ABCA4P78363 TSPY18P-201ENST00000441642 509 ntBASIC16.11■□□□□ 0.17
ABCA4P78363 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.11■□□□□ 0.17
ABCA4P78363 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
ABCA4P78363 MIR3180-5-201ENST00000583743 153 ntBASIC16.11■□□□□ 0.17
ABCA4P78363 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
ABCA4P78363 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 KRT18P1-202ENST00000452408 1331 ntBASIC16.11■□□□□ 0.17
ABCA4P78363 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.11■□□□□ 0.17
ABCA4P78363 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.11■□□□□ 0.17
ABCA4P78363 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
ABCA4P78363 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
ABCA4P78363 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 HOXB1-202ENST00000577092 1414 ntBASIC16.11■□□□□ 0.17
ABCA4P78363 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.11■□□□□ 0.17
ABCA4P78363 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ABCA4P78363 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
ABCA4P78363 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
ABCA4P78363 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
ABCA4P78363 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.1■□□□□ 0.17
ABCA4P78363 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC16.1■□□□□ 0.17
ABCA4P78363 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.1■□□□□ 0.17
ABCA4P78363 MCCD1P1-208ENST00000445732 328 ntBASIC16.1■□□□□ 0.17
ABCA4P78363 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.1■□□□□ 0.17
ABCA4P78363 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.1■□□□□ 0.17
ABCA4P78363 AL662844.1-201ENST00000546340 181 ntBASIC16.1■□□□□ 0.17
ABCA4P78363 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.1■□□□□ 0.17
ABCA4P78363 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.1■□□□□ 0.17
ABCA4P78363 AP002414.4-201ENST00000589764 1148 ntBASIC16.1■□□□□ 0.17
ABCA4P78363 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
ABCA4P78363 AC120114.3-201ENST00000611923 658 ntBASIC16.1■□□□□ 0.17
ABCA4P78363 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.1■□□□□ 0.17
ABCA4P78363 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.1■□□□□ 0.17
ABCA4P78363 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
ABCA4P78363 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.1■□□□□ 0.17
ABCA4P78363 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
ABCA4P78363 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.1■□□□□ 0.17
ABCA4P78363 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms