Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
RPS28P62857 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC10.87□□□□□ -0.67
RPS28P62857 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
RPS28P62857 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
RPS28P62857 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC10.87□□□□□ -0.67
RPS28P62857 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC10.87□□□□□ -0.67
RPS28P62857 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 AL359258.3-201ENST00000622910 2331 ntBASIC10.87□□□□□ -0.67
RPS28P62857 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC10.87□□□□□ -0.67
RPS28P62857 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC10.87□□□□□ -0.67
RPS28P62857 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC10.87□□□□□ -0.67
RPS28P62857 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC10.87□□□□□ -0.67
RPS28P62857 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
RPS28P62857 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC10.87□□□□□ -0.67
RPS28P62857 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
RPS28P62857 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 AC004817.3-201ENST00000602957 2129 ntBASIC10.87□□□□□ -0.67
RPS28P62857 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
RPS28P62857 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
RPS28P62857 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
RPS28P62857 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC10.86□□□□□ -0.67
RPS28P62857 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC10.86□□□□□ -0.67
RPS28P62857 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC10.86□□□□□ -0.67
RPS28P62857 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC10.86□□□□□ -0.67
RPS28P62857 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC10.86□□□□□ -0.67
RPS28P62857 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
RPS28P62857 AL161938.1-201ENST00000569833 2180 ntBASIC10.86□□□□□ -0.67
RPS28P62857 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
RPS28P62857 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC10.86□□□□□ -0.67
RPS28P62857 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
RPS28P62857 MFF-207ENST00000409565 1548 ntTSL 2 BASIC10.86□□□□□ -0.67
RPS28P62857 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC10.86□□□□□ -0.67
RPS28P62857 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC10.86□□□□□ -0.67
RPS28P62857 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC10.86□□□□□ -0.67
RPS28P62857 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
RPS28P62857 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC10.86□□□□□ -0.67
RPS28P62857 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
RPS28P62857 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
RPS28P62857 PPP1R26P4-201ENST00000619065 3527 ntBASIC10.86□□□□□ -0.67
RPS28P62857 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC10.86□□□□□ -0.67
RPS28P62857 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
RPS28P62857 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC10.86□□□□□ -0.67
RPS28P62857 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC10.86□□□□□ -0.67
RPS28P62857 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC10.86□□□□□ -0.67
RPS28P62857 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
RPS28P62857 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
RPS28P62857 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
RPS28P62857 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC10.85□□□□□ -0.67
RPS28P62857 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
RPS28P62857 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
RPS28P62857 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
RPS28P62857 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
RPS28P62857 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms