Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 PAWRP1-201ENST00000451083 565 ntBASIC21.7■■□□□ 1.06
CTCFP49711 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.7■■□□□ 1.06
CTCFP49711 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC21.7■■□□□ 1.06
CTCFP49711 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC21.7■■□□□ 1.06
CTCFP49711 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.7■■□□□ 1.06
CTCFP49711 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.7■■□□□ 1.06
CTCFP49711 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CTCFP49711 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.7■■□□□ 1.06
CTCFP49711 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
CTCFP49711 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTCFP49711 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.7■■□□□ 1.06
CTCFP49711 DPP3P2-201ENST00000416030 1696 ntBASIC21.69■■□□□ 1.06
CTCFP49711 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
CTCFP49711 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC21.69■■□□□ 1.06
CTCFP49711 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC21.69■■□□□ 1.06
CTCFP49711 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.69■■□□□ 1.06
CTCFP49711 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC21.69■■□□□ 1.06
CTCFP49711 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.69■■□□□ 1.06
CTCFP49711 AC002347.1-201ENST00000569543 541 ntBASIC21.69■■□□□ 1.06
CTCFP49711 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC21.69■■□□□ 1.06
CTCFP49711 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTCFP49711 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.69■■□□□ 1.06
CTCFP49711 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.69■■□□□ 1.06
CTCFP49711 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.68■■□□□ 1.06
CTCFP49711 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CTCFP49711 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.68■■□□□ 1.06
CTCFP49711 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.68■■□□□ 1.06
CTCFP49711 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTCFP49711 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTCFP49711 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTCFP49711 RN7SL606P-201ENST00000472779 293 ntBASIC21.68■■□□□ 1.06
CTCFP49711 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTCFP49711 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
CTCFP49711 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.68■■□□□ 1.06
CTCFP49711 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.68■■□□□ 1.06
CTCFP49711 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC21.68■■□□□ 1.06
CTCFP49711 MIR1199-201ENST00000621445 119 ntBASIC21.68■■□□□ 1.06
CTCFP49711 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC21.68■■□□□ 1.06
CTCFP49711 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTCFP49711 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.68■■□□□ 1.06
CTCFP49711 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.68■■□□□ 1.06
CTCFP49711 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTCFP49711 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CTCFP49711 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTCFP49711 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTCFP49711 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CTCFP49711 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CTCFP49711 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTCFP49711 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CTCFP49711 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
CTCFP49711 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTCFP49711 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CTCFP49711 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CTCFP49711 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTCFP49711 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTCFP49711 PNMT-202ENST00000394246 821 ntTSL 2 BASIC21.67■■□□□ 1.06
CTCFP49711 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.67■■□□□ 1.06
CTCFP49711 AC132008.2-207ENST00000454517 770 ntBASIC21.67■■□□□ 1.06
CTCFP49711 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.67■■□□□ 1.06
CTCFP49711 SNHG9-202ENST00000564014 471 ntBASIC21.67■■□□□ 1.06
CTCFP49711 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC21.67■■□□□ 1.06
CTCFP49711 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC21.67■■□□□ 1.06
CTCFP49711 MTDHP5-201ENST00000598980 586 ntBASIC21.67■■□□□ 1.06
CTCFP49711 GPR32P1-201ENST00000601788 811 ntBASIC21.67■■□□□ 1.06
CTCFP49711 Z83851.2-201ENST00000609564 659 ntBASIC21.67■■□□□ 1.06
CTCFP49711 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CTCFP49711 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.67■■□□□ 1.06
CTCFP49711 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.67■■□□□ 1.06
CTCFP49711 AL049796.1-201ENST00000565336 1766 ntBASIC21.66■■□□□ 1.06
CTCFP49711 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CTCFP49711 GPAT2P1-201ENST00000444924 1672 ntBASIC21.66■■□□□ 1.06
CTCFP49711 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTCFP49711 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTCFP49711 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC21.66■■□□□ 1.06
CTCFP49711 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.66■■□□□ 1.06
CTCFP49711 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CTCFP49711 RNA5SP416-201ENST00000516838 111 ntBASIC21.66■■□□□ 1.06
CTCFP49711 SPCS2P1-201ENST00000561636 679 ntBASIC21.66■■□□□ 1.06
CTCFP49711 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.66■■□□□ 1.06
CTCFP49711 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.66■■□□□ 1.06
CTCFP49711 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC21.66■■□□□ 1.06
CTCFP49711 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms