Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.65■□□□□ 0.58
CXCL12P48061 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.65■□□□□ 0.58
CXCL12P48061 SLC25A1P1-201ENST00000528351 927 ntBASIC18.65■□□□□ 0.58
CXCL12P48061 AC092865.5-201ENST00000545435 363 ntBASIC18.65■□□□□ 0.58
CXCL12P48061 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CXCL12P48061 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CXCL12P48061 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CXCL12P48061 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.65■□□□□ 0.58
CXCL12P48061 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CXCL12P48061 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CXCL12P48061 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CXCL12P48061 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CXCL12P48061 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.64■□□□□ 0.58
CXCL12P48061 AC006333.2-201ENST00000607957 2099 ntBASIC18.64■□□□□ 0.57
CXCL12P48061 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 KRT18P67-201ENST00000432816 1264 ntBASIC18.64■□□□□ 0.57
CXCL12P48061 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.64■□□□□ 0.57
CXCL12P48061 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.64■□□□□ 0.57
CXCL12P48061 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.64■□□□□ 0.57
CXCL12P48061 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.64■□□□□ 0.57
CXCL12P48061 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.64■□□□□ 0.57
CXCL12P48061 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 AL591684.3-201ENST00000605187 298 ntBASIC18.64■□□□□ 0.57
CXCL12P48061 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 Z82202.1-201ENST00000623446 1880 ntBASIC18.64■□□□□ 0.57
CXCL12P48061 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL12P48061 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.63■□□□□ 0.57
CXCL12P48061 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.63■□□□□ 0.57
CXCL12P48061 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.63■□□□□ 0.57
CXCL12P48061 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.63■□□□□ 0.57
CXCL12P48061 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CXCL12P48061 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 AC091607.1-201ENST00000490318 1060 ntBASIC18.63■□□□□ 0.57
CXCL12P48061 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.63■□□□□ 0.57
CXCL12P48061 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.63■□□□□ 0.57
CXCL12P48061 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CXCL12P48061 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.63■□□□□ 0.57
CXCL12P48061 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL12P48061 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CXCL12P48061 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CXCL12P48061 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CXCL12P48061 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.62■□□□□ 0.57
CXCL12P48061 MIR1233-2-201ENST00000408138 82 ntBASIC18.62■□□□□ 0.57
CXCL12P48061 MIR1233-1-201ENST00000408722 82 ntBASIC18.62■□□□□ 0.57
CXCL12P48061 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.62■□□□□ 0.57
CXCL12P48061 RNPS1P1-201ENST00000507437 918 ntBASIC18.62■□□□□ 0.57
CXCL12P48061 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.62■□□□□ 0.57
CXCL12P48061 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.62■□□□□ 0.57
CXCL12P48061 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CXCL12P48061 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CXCL12P48061 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.62■□□□□ 0.57
CXCL12P48061 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL12P48061 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CXCL12P48061 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL12P48061 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CXCL12P48061 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL12P48061 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.61■□□□□ 0.57
CXCL12P48061 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL12P48061 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.61■□□□□ 0.57
CXCL12P48061 TCF3P1-201ENST00000423021 1937 ntBASIC18.61■□□□□ 0.57
CXCL12P48061 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL12P48061 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.61■□□□□ 0.57
CXCL12P48061 KRT89P-201ENST00000620027 1478 ntBASIC18.61■□□□□ 0.57
CXCL12P48061 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL12P48061 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CXCL12P48061 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL12P48061 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL12P48061 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms