Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
HNF4AP41235 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
HNF4AP41235 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.2■□□□□ 0.5
HNF4AP41235 SLC25A1P4-201ENST00000567977 778 ntBASIC18.2■□□□□ 0.5
HNF4AP41235 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 AP000692.2-201ENST00000608391 879 ntBASIC18.2■□□□□ 0.5
HNF4AP41235 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.2■□□□□ 0.5
HNF4AP41235 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HNF4AP41235 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.19■□□□□ 0.5
HNF4AP41235 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
HNF4AP41235 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 HTR7P1-202ENST00000624664 4411 ntBASIC18.19■□□□□ 0.5
HNF4AP41235 HEIH-201ENST00000623091 1652 ntBASIC18.19■□□□□ 0.5
HNF4AP41235 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HNF4AP41235 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HNF4AP41235 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HNF4AP41235 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HNF4AP41235 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.19■□□□□ 0.5
HNF4AP41235 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.19■□□□□ 0.5
HNF4AP41235 TSPY15P-201ENST00000457163 923 ntBASIC18.19■□□□□ 0.5
HNF4AP41235 AC116562.2-201ENST00000507042 360 ntBASIC18.19■□□□□ 0.5
HNF4AP41235 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HNF4AP41235 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.19■□□□□ 0.5
HNF4AP41235 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.19■□□□□ 0.5
HNF4AP41235 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
HNF4AP41235 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.19■□□□□ 0.5
HNF4AP41235 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HNF4AP41235 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.19■□□□□ 0.5
HNF4AP41235 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.19■□□□□ 0.5
HNF4AP41235 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.19■□□□□ 0.5
HNF4AP41235 KRT17P2-201ENST00000300992 1314 ntBASIC18.19■□□□□ 0.5
HNF4AP41235 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HNF4AP41235 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HNF4AP41235 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HNF4AP41235 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
HNF4AP41235 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
HNF4AP41235 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HNF4AP41235 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HNF4AP41235 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
HNF4AP41235 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.18■□□□□ 0.5
HNF4AP41235 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.18■□□□□ 0.5
HNF4AP41235 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.18■□□□□ 0.5
HNF4AP41235 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.18■□□□□ 0.5
HNF4AP41235 DGCR10-201ENST00000609839 495 ntBASIC18.18■□□□□ 0.5
HNF4AP41235 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.18■□□□□ 0.5
HNF4AP41235 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HNF4AP41235 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.18■□□□□ 0.5
HNF4AP41235 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HNF4AP41235 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HNF4AP41235 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
HNF4AP41235 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
HNF4AP41235 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HNF4AP41235 ANO7L1-203ENST00000602586 1720 ntBASIC18.18■□□□□ 0.5
HNF4AP41235 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.17■□□□□ 0.5
HNF4AP41235 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
HNF4AP41235 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 CRYGFP-201ENST00000418459 633 ntBASIC18.17■□□□□ 0.5
HNF4AP41235 AC097488.1-201ENST00000507834 756 ntBASIC18.17■□□□□ 0.5
HNF4AP41235 AL355075.4-201ENST00000554988 638 ntBASIC18.17■□□□□ 0.5
HNF4AP41235 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.17■□□□□ 0.5
HNF4AP41235 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.17■□□□□ 0.5
HNF4AP41235 AC068587.9-201ENST00000641814 219 ntBASIC18.17■□□□□ 0.5
HNF4AP41235 KRT8P32-201ENST00000512863 1461 ntBASIC18.17■□□□□ 0.5
HNF4AP41235 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms