Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
COL8A1P27658 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 NSUN5P1-202ENST00000421140 1535 ntBASIC16.35■□□□□ 0.21
COL8A1P27658 NSUN5P2-203ENST00000457352 1529 ntBASIC16.35■□□□□ 0.21
COL8A1P27658 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.35■□□□□ 0.21
COL8A1P27658 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC16.35■□□□□ 0.21
COL8A1P27658 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 FEM1AP1-201ENST00000431297 1995 ntBASIC16.35■□□□□ 0.21
COL8A1P27658 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.35■□□□□ 0.21
COL8A1P27658 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.35■□□□□ 0.21
COL8A1P27658 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.35■□□□□ 0.21
COL8A1P27658 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
COL8A1P27658 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 AC098831.1-202ENST00000438821 336 ntBASIC16.35■□□□□ 0.21
COL8A1P27658 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.35■□□□□ 0.21
COL8A1P27658 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.35■□□□□ 0.21
COL8A1P27658 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
COL8A1P27658 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.35■□□□□ 0.21
COL8A1P27658 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.35■□□□□ 0.21
COL8A1P27658 AP001160.2-201ENST00000596071 487 ntBASIC16.35■□□□□ 0.21
COL8A1P27658 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.35■□□□□ 0.21
COL8A1P27658 AC079416.2-201ENST00000625035 1193 ntBASIC16.35■□□□□ 0.21
COL8A1P27658 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 ZNF259P1-201ENST00000407656 1365 ntBASIC16.35■□□□□ 0.21
COL8A1P27658 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL8A1P27658 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.35■□□□□ 0.21
COL8A1P27658 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
COL8A1P27658 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL8A1P27658 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
COL8A1P27658 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL8A1P27658 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL8A1P27658 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.34■□□□□ 0.21
COL8A1P27658 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.34■□□□□ 0.21
COL8A1P27658 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 AC124864.1-201ENST00000623408 392 ntBASIC16.34■□□□□ 0.21
COL8A1P27658 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.34■□□□□ 0.21
COL8A1P27658 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL8A1P27658 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.34■□□□□ 0.21
COL8A1P27658 AIRN-201ENST00000601203 4374 ntBASIC16.34■□□□□ 0.21
COL8A1P27658 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL8A1P27658 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL8A1P27658 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.21
COL8A1P27658 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
COL8A1P27658 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL8A1P27658 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.33■□□□□ 0.21
COL8A1P27658 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
COL8A1P27658 AL023284.2-201ENST00000405850 579 ntBASIC16.33■□□□□ 0.2
COL8A1P27658 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL8A1P27658 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
COL8A1P27658 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.33■□□□□ 0.2
COL8A1P27658 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.33■□□□□ 0.2
COL8A1P27658 AP003733.1-201ENST00000491725 852 ntBASIC16.33■□□□□ 0.2
COL8A1P27658 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.33■□□□□ 0.2
COL8A1P27658 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL8A1P27658 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.33■□□□□ 0.2
COL8A1P27658 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
COL8A1P27658 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.33■□□□□ 0.2
COL8A1P27658 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.33■□□□□ 0.2
COL8A1P27658 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.33■□□□□ 0.2
COL8A1P27658 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.33■□□□□ 0.2
COL8A1P27658 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
COL8A1P27658 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL8A1P27658 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL8A1P27658 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL8A1P27658 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.33■□□□□ 0.2
COL8A1P27658 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL8A1P27658 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC16.33■□□□□ 0.2
COL8A1P27658 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL8A1P27658 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL8A1P27658 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
COL8A1P27658 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
COL8A1P27658 AF106564.1-201ENST00000607058 2553 ntBASIC16.33■□□□□ 0.2
COL8A1P27658 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL8A1P27658 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
COL8A1P27658 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL8A1P27658 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL8A1P27658 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL8A1P27658 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms