Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.27■□□□□ 0.68
COL9A1P20849 SNHG9-202ENST00000564014 471 ntBASIC19.27■□□□□ 0.68
COL9A1P20849 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.27■□□□□ 0.68
COL9A1P20849 AL096865.1-201ENST00000606796 927 ntBASIC19.27■□□□□ 0.68
COL9A1P20849 FAM215A-202ENST00000632077 792 ntBASIC19.27■□□□□ 0.68
COL9A1P20849 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
COL9A1P20849 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.27■□□□□ 0.68
COL9A1P20849 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL9A1P20849 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL9A1P20849 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL9A1P20849 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL9A1P20849 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.27■□□□□ 0.67
COL9A1P20849 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL9A1P20849 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.26■□□□□ 0.67
COL9A1P20849 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL9A1P20849 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL9A1P20849 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL9A1P20849 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.26■□□□□ 0.67
COL9A1P20849 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL9A1P20849 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL9A1P20849 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
COL9A1P20849 RPS2P1-201ENST00000434010 821 ntBASIC19.26■□□□□ 0.67
COL9A1P20849 BCRP1-201ENST00000444246 691 ntBASIC19.26■□□□□ 0.67
COL9A1P20849 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.26■□□□□ 0.67
COL9A1P20849 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.26■□□□□ 0.67
COL9A1P20849 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.26■□□□□ 0.67
COL9A1P20849 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.26■□□□□ 0.67
COL9A1P20849 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL9A1P20849 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL9A1P20849 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL9A1P20849 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.25■□□□□ 0.67
COL9A1P20849 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL9A1P20849 TCF3P1-201ENST00000423021 1937 ntBASIC19.25■□□□□ 0.67
COL9A1P20849 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.25■□□□□ 0.67
COL9A1P20849 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.25■□□□□ 0.67
COL9A1P20849 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL9A1P20849 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.25■□□□□ 0.67
COL9A1P20849 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.25■□□□□ 0.67
COL9A1P20849 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 AL008721.1-201ENST00000609964 604 ntBASIC19.25■□□□□ 0.67
COL9A1P20849 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.25■□□□□ 0.67
COL9A1P20849 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
COL9A1P20849 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.25■□□□□ 0.67
COL9A1P20849 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL9A1P20849 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
COL9A1P20849 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.24■□□□□ 0.67
COL9A1P20849 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL9A1P20849 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL9A1P20849 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.24■□□□□ 0.67
COL9A1P20849 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.24■□□□□ 0.67
COL9A1P20849 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.24■□□□□ 0.67
COL9A1P20849 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL9A1P20849 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL9A1P20849 DCD-201ENST00000293371 645 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL9A1P20849 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL9A1P20849 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.24■□□□□ 0.67
COL9A1P20849 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.24■□□□□ 0.67
COL9A1P20849 IGHV3-47-201ENST00000425060 335 ntBASIC19.24■□□□□ 0.67
COL9A1P20849 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.24■□□□□ 0.67
COL9A1P20849 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.24■□□□□ 0.67
COL9A1P20849 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.24■□□□□ 0.67
COL9A1P20849 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.24■□□□□ 0.67
COL9A1P20849 AF228730.6-201ENST00000641497 218 ntBASIC19.24■□□□□ 0.67
COL9A1P20849 AC084121.3-201ENST00000641716 218 ntBASIC19.24■□□□□ 0.67
COL9A1P20849 AC105233.6-201ENST00000642093 218 ntBASIC19.24■□□□□ 0.67
COL9A1P20849 ZNF815P-204ENST00000434898 1737 ntBASIC19.24■□□□□ 0.67
COL9A1P20849 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL9A1P20849 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL9A1P20849 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL9A1P20849 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL9A1P20849 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.24■□□□□ 0.67
COL9A1P20849 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.24■□□□□ 0.67
COL9A1P20849 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
COL9A1P20849 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
COL9A1P20849 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL9A1P20849 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
COL9A1P20849 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL9A1P20849 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL9A1P20849 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
COL9A1P20849 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL9A1P20849 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL9A1P20849 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.23■□□□□ 0.67
COL9A1P20849 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.23■□□□□ 0.67
COL9A1P20849 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.23■□□□□ 0.67
COL9A1P20849 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.23■□□□□ 0.67
COL9A1P20849 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.23■□□□□ 0.67
COL9A1P20849 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.23■□□□□ 0.67
COL9A1P20849 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.23■□□□□ 0.67
COL9A1P20849 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.23■□□□□ 0.67
COL9A1P20849 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms