Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A3P12111 AC011840.4-201ENST00000578471 627 ntBASIC19.54■□□□□ 0.72
COL6A3P12111 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A3P12111 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A3P12111 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A3P12111 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A3P12111 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A3P12111 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A3P12111 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.53■□□□□ 0.72
COL6A3P12111 KRT18P2-201ENST00000447938 1258 ntBASIC19.53■□□□□ 0.72
COL6A3P12111 AP003733.1-201ENST00000491725 852 ntBASIC19.53■□□□□ 0.72
COL6A3P12111 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.53■□□□□ 0.72
COL6A3P12111 AL078644.1-201ENST00000609881 752 ntBASIC19.53■□□□□ 0.72
COL6A3P12111 AC092865.6-201ENST00000642101 219 ntBASIC19.53■□□□□ 0.72
COL6A3P12111 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
COL6A3P12111 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
COL6A3P12111 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A3P12111 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A3P12111 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A3P12111 AL023284.2-201ENST00000405850 579 ntBASIC19.53■□□□□ 0.72
COL6A3P12111 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.53■□□□□ 0.72
COL6A3P12111 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.53■□□□□ 0.72
COL6A3P12111 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.53■□□□□ 0.72
COL6A3P12111 AL359881.2-201ENST00000602973 570 ntBASIC19.53■□□□□ 0.72
COL6A3P12111 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL6A3P12111 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A3P12111 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A3P12111 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A3P12111 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.53■□□□□ 0.72
COL6A3P12111 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A3P12111 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A3P12111 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.52■□□□□ 0.72
COL6A3P12111 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.52■□□□□ 0.72
COL6A3P12111 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A3P12111 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A3P12111 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC19.52■□□□□ 0.72
COL6A3P12111 AC008735.5-201ENST00000623544 497 ntBASIC19.52■□□□□ 0.72
COL6A3P12111 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A3P12111 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A3P12111 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.52■□□□□ 0.72
COL6A3P12111 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
COL6A3P12111 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.52■□□□□ 0.72
COL6A3P12111 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.52■□□□□ 0.72
COL6A3P12111 OR7E14P-202ENST00000530490 1290 ntBASIC19.52■□□□□ 0.72
COL6A3P12111 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A3P12111 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
COL6A3P12111 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.52■□□□□ 0.72
COL6A3P12111 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL6A3P12111 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL6A3P12111 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL6A3P12111 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.52■□□□□ 0.71
COL6A3P12111 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.52■□□□□ 0.71
COL6A3P12111 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL6A3P12111 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.52■□□□□ 0.71
COL6A3P12111 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.52■□□□□ 0.71
COL6A3P12111 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.51■□□□□ 0.71
COL6A3P12111 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL6A3P12111 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.51■□□□□ 0.71
COL6A3P12111 AC084346.2-201ENST00000607097 949 ntBASIC19.51■□□□□ 0.71
COL6A3P12111 AC092902.6-201ENST00000641783 218 ntBASIC19.51■□□□□ 0.71
COL6A3P12111 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.51■□□□□ 0.71
COL6A3P12111 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.51■□□□□ 0.71
COL6A3P12111 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 AC069262.1-201ENST00000539058 672 ntBASIC19.51■□□□□ 0.71
COL6A3P12111 RN7SL204P-201ENST00000582831 262 ntBASIC19.51■□□□□ 0.71
COL6A3P12111 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.51■□□□□ 0.71
COL6A3P12111 AC073592.5-201ENST00000624854 528 ntBASIC19.51■□□□□ 0.71
COL6A3P12111 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.51■□□□□ 0.71
COL6A3P12111 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.51■□□□□ 0.71
COL6A3P12111 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A3P12111 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.5■□□□□ 0.71
COL6A3P12111 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A3P12111 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.5■□□□□ 0.71
COL6A3P12111 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A3P12111 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A3P12111 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.5■□□□□ 0.71
COL6A3P12111 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.5■□□□□ 0.71
COL6A3P12111 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.5■□□□□ 0.71
COL6A3P12111 AP005018.1-201ENST00000525475 301 ntBASIC19.5■□□□□ 0.71
COL6A3P12111 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC19.5■□□□□ 0.71
COL6A3P12111 AL031432.2-201ENST00000566714 459 ntBASIC19.5■□□□□ 0.71
COL6A3P12111 AL928711.1-201ENST00000570165 459 ntBASIC19.5■□□□□ 0.71
COL6A3P12111 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.5■□□□□ 0.71
COL6A3P12111 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A3P12111 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A3P12111 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms