Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 LINC00265-3P-201ENST00000447588 903 ntBASIC21.9■■□□□ 1.1
COL2A1P02458 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 IFNL4P1-201ENST00000607083 540 ntBASIC21.9■■□□□ 1.1
COL2A1P02458 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
COL2A1P02458 AC083906.6-201ENST00000641366 219 ntBASIC21.9■■□□□ 1.1
COL2A1P02458 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.9■■□□□ 1.1
COL2A1P02458 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC21.9■■□□□ 1.1
COL2A1P02458 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
COL2A1P02458 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.9■■□□□ 1.1
COL2A1P02458 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC21.9■■□□□ 1.1
COL2A1P02458 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 AL357033.4-201ENST00000617703 1807 ntBASIC21.9■■□□□ 1.1
COL2A1P02458 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL2A1P02458 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.9■■□□□ 1.1
COL2A1P02458 FAAHP1-202ENST00000446499 1238 ntBASIC21.9■■□□□ 1.1
COL2A1P02458 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
COL2A1P02458 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.9■■□□□ 1.1
COL2A1P02458 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL2A1P02458 AL592071.1-201ENST00000611956 408 ntBASIC21.9■■□□□ 1.1
COL2A1P02458 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
COL2A1P02458 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL2A1P02458 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.89■■□□□ 1.1
COL2A1P02458 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.89■■□□□ 1.09
COL2A1P02458 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL2A1P02458 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
COL2A1P02458 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.89■■□□□ 1.09
COL2A1P02458 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL2A1P02458 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL2A1P02458 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL2A1P02458 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL2A1P02458 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.89■■□□□ 1.09
COL2A1P02458 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.89■■□□□ 1.09
COL2A1P02458 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.89■■□□□ 1.09
COL2A1P02458 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL2A1P02458 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
COL2A1P02458 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
COL2A1P02458 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.88■■□□□ 1.09
COL2A1P02458 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL2A1P02458 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL2A1P02458 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.88■■□□□ 1.09
COL2A1P02458 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
COL2A1P02458 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.88■■□□□ 1.09
COL2A1P02458 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL2A1P02458 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.88■■□□□ 1.09
COL2A1P02458 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL2A1P02458 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
COL2A1P02458 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
COL2A1P02458 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.88■■□□□ 1.09
COL2A1P02458 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL2A1P02458 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL2A1P02458 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL2A1P02458 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL2A1P02458 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL2A1P02458 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL2A1P02458 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
COL2A1P02458 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL2A1P02458 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL2A1P02458 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL2A1P02458 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL2A1P02458 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.87■■□□□ 1.09
COL2A1P02458 AC004870.1-201ENST00000315132 882 ntBASIC21.87■■□□□ 1.09
COL2A1P02458 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL2A1P02458 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.87■■□□□ 1.09
COL2A1P02458 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.87■■□□□ 1.09
COL2A1P02458 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
COL2A1P02458 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
COL2A1P02458 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL2A1P02458 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.87■■□□□ 1.09
COL2A1P02458 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
COL2A1P02458 AC233702.3-201ENST00000578656 1387 ntBASIC21.87■■□□□ 1.09
COL2A1P02458 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.87■■□□□ 1.09
COL2A1P02458 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.87■■□□□ 1.09
COL2A1P02458 AC093484.2-201ENST00000580996 2166 ntBASIC21.87■■□□□ 1.09
COL2A1P02458 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.86■■□□□ 1.09
COL2A1P02458 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL2A1P02458 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL2A1P02458 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL2A1P02458 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.86■■□□□ 1.09
COL2A1P02458 KRT17P6-201ENST00000453795 1220 ntBASIC21.86■■□□□ 1.09
COL2A1P02458 UNC93B7-201ENST00000509439 705 ntBASIC21.86■■□□□ 1.09
COL2A1P02458 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC21.86■■□□□ 1.09
COL2A1P02458 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
COL2A1P02458 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL2A1P02458 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.86■■□□□ 1.09
COL2A1P02458 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL2A1P02458 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL2A1P02458 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.86■■□□□ 1.09
COL2A1P02458 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL2A1P02458 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
COL2A1P02458 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms