Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.7■□□□□ 0.1
ABCA1O95477 FGF14-AS2-201ENST00000606448 1074 ntBASIC15.7■□□□□ 0.1
ABCA1O95477 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
ABCA1O95477 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
ABCA1O95477 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.7■□□□□ 0.1
ABCA1O95477 RASA4DP-201ENST00000460726 1199 ntBASIC15.7■□□□□ 0.1
ABCA1O95477 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA1O95477 AC092329.2-201ENST00000598402 547 ntBASIC15.7■□□□□ 0.1
ABCA1O95477 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.7■□□□□ 0.1
ABCA1O95477 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA1O95477 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA1O95477 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 FAAHP1-202ENST00000446499 1238 ntBASIC15.69■□□□□ 0.1
ABCA1O95477 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC15.69■□□□□ 0.1
ABCA1O95477 AC034232.1-201ENST00000506026 1064 ntBASIC15.69■□□□□ 0.1
ABCA1O95477 AC012615.1-201ENST00000565797 1299 ntBASIC15.69■□□□□ 0.1
ABCA1O95477 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.69■□□□□ 0.1
ABCA1O95477 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC15.69■□□□□ 0.1
ABCA1O95477 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC15.69■□□□□ 0.1
ABCA1O95477 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
ABCA1O95477 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.69■□□□□ 0.1
ABCA1O95477 AL671883.3-201ENST00000603274 991 ntBASIC15.69■□□□□ 0.1
ABCA1O95477 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.69■□□□□ 0.1
ABCA1O95477 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA1O95477 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.68■□□□□ 0.1
ABCA1O95477 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC15.68■□□□□ 0.1
ABCA1O95477 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC15.68■□□□□ 0.1
ABCA1O95477 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
ABCA1O95477 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 PRELID1P1-202ENST00000567272 903 ntBASIC15.68■□□□□ 0.1
ABCA1O95477 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC15.68■□□□□ 0.1
ABCA1O95477 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
ABCA1O95477 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
ABCA1O95477 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
ABCA1O95477 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
ABCA1O95477 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
ABCA1O95477 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
ABCA1O95477 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
ABCA1O95477 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.68■□□□□ 0.1
ABCA1O95477 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15.68■□□□□ 0.1
ABCA1O95477 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.68■□□□□ 0.1
ABCA1O95477 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
ABCA1O95477 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA1O95477 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
ABCA1O95477 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA1O95477 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA1O95477 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA1O95477 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA1O95477 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA1O95477 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA1O95477 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA1O95477 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC15.67■□□□□ 0.1
ABCA1O95477 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA1O95477 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA1O95477 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ABCA1O95477 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC15.67■□□□□ 0.1
ABCA1O95477 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms