Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
SHOX2O60902 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHOX2O60902 LINC02228-203ENST00000641970 1355 ntBASIC18.79■□□□□ 0.6
SHOX2O60902 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
SHOX2O60902 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.79■□□□□ 0.6
SHOX2O60902 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SHOX2O60902 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SHOX2O60902 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
SHOX2O60902 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.78■□□□□ 0.6
SHOX2O60902 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOX2O60902 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOX2O60902 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOX2O60902 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOX2O60902 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOX2O60902 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHOX2O60902 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.78■□□□□ 0.6
SHOX2O60902 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.78■□□□□ 0.6
SHOX2O60902 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOX2O60902 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHOX2O60902 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.78■□□□□ 0.6
SHOX2O60902 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.78■□□□□ 0.6
SHOX2O60902 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
SHOX2O60902 PCDHB19P-201ENST00000570871 2371 ntBASIC18.78■□□□□ 0.6
SHOX2O60902 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.78■□□□□ 0.6
SHOX2O60902 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SHOX2O60902 MTMR9LP-203ENST00000426597 1545 ntBASIC18.78■□□□□ 0.6
SHOX2O60902 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SHOX2O60902 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SHOX2O60902 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.78■□□□□ 0.6
SHOX2O60902 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.77■□□□□ 0.6
SHOX2O60902 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
SHOX2O60902 UBALD1-205ENST00000590891 2641 ntBASIC18.77■□□□□ 0.6
SHOX2O60902 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
SHOX2O60902 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SHOX2O60902 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.77■□□□□ 0.6
SHOX2O60902 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.77■□□□□ 0.6
SHOX2O60902 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.77■□□□□ 0.6
SHOX2O60902 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.77■□□□□ 0.6
SHOX2O60902 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.77■□□□□ 0.6
SHOX2O60902 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SHOX2O60902 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.77■□□□□ 0.6
SHOX2O60902 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.77■□□□□ 0.6
SHOX2O60902 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 PCDH8P1-201ENST00000428983 2773 ntBASIC18.77■□□□□ 0.6
SHOX2O60902 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SHOX2O60902 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SHOX2O60902 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SHOX2O60902 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHOX2O60902 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
SHOX2O60902 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHOX2O60902 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHOX2O60902 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.76■□□□□ 0.59
SHOX2O60902 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.76■□□□□ 0.59
SHOX2O60902 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
SHOX2O60902 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.76■□□□□ 0.59
SHOX2O60902 AL591742.1-201ENST00000604433 565 ntBASIC18.76■□□□□ 0.59
SHOX2O60902 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 AC008894.3-201ENST00000624324 3103 ntBASIC18.76■□□□□ 0.59
SHOX2O60902 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SHOX2O60902 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.76■□□□□ 0.59
SHOX2O60902 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.76■□□□□ 0.59
SHOX2O60902 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHOX2O60902 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SHOX2O60902 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
SHOX2O60902 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHOX2O60902 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.75■□□□□ 0.59
SHOX2O60902 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.75■□□□□ 0.59
SHOX2O60902 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms