Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 RBM17P3-201ENST00000417687 1192 ntBASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL6A6A6NMZ7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 HLA-J-202ENST00000469281 1241 ntBASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 AC040169.1-201ENST00000565382 521 ntBASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.86■□□□□ 0.29
COL6A6A6NMZ7 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 RN7SL606P-201ENST00000472779 293 ntBASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 AC010240.3-201ENST00000607688 395 ntBASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 AC096582.2-201ENST00000510860 516 ntBASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 SPCS2P1-201ENST00000561636 679 ntBASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL6A6A6NMZ7 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 IGHV3-41-201ENST00000613121 348 ntBASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms