Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.01■■□□□ 1.75
PCDH9Q9HC56 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
PCDH9Q9HC56 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC26■■□□□ 1.75
PCDH9Q9HC56 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC26■■□□□ 1.75
PCDH9Q9HC56 AC018358.1-201ENST00000631079 1402 ntBASIC26■■□□□ 1.75
PCDH9Q9HC56 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
PCDH9Q9HC56 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.99■■□□□ 1.75
PCDH9Q9HC56 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC25.99■■□□□ 1.75
PCDH9Q9HC56 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
PCDH9Q9HC56 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PCDH9Q9HC56 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.98■■□□□ 1.75
PCDH9Q9HC56 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.98■■□□□ 1.75
PCDH9Q9HC56 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PCDH9Q9HC56 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.98■■□□□ 1.75
PCDH9Q9HC56 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.98■■□□□ 1.75
PCDH9Q9HC56 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.97■■□□□ 1.75
PCDH9Q9HC56 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.97■■□□□ 1.75
PCDH9Q9HC56 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PCDH9Q9HC56 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
PCDH9Q9HC56 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.97■■□□□ 1.75
PCDH9Q9HC56 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PCDH9Q9HC56 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
PCDH9Q9HC56 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
PCDH9Q9HC56 ABHD17AP4-201ENST00000411545 909 ntBASIC25.95■■□□□ 1.74
PCDH9Q9HC56 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
PCDH9Q9HC56 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.94■■□□□ 1.74
PCDH9Q9HC56 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.94■■□□□ 1.74
PCDH9Q9HC56 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
PCDH9Q9HC56 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
PCDH9Q9HC56 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.94■■□□□ 1.74
PCDH9Q9HC56 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.93■■□□□ 1.74
PCDH9Q9HC56 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.93■■□□□ 1.74
PCDH9Q9HC56 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.93■■□□□ 1.74
PCDH9Q9HC56 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDH9Q9HC56 ZNRF2P2-203ENST00000454624 420 ntBASIC25.92■■□□□ 1.74
PCDH9Q9HC56 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDH9Q9HC56 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDH9Q9HC56 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
PCDH9Q9HC56 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.91■■□□□ 1.74
PCDH9Q9HC56 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.91■■□□□ 1.74
PCDH9Q9HC56 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
PCDH9Q9HC56 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
PCDH9Q9HC56 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
PCDH9Q9HC56 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
PCDH9Q9HC56 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
PCDH9Q9HC56 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
PCDH9Q9HC56 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
PCDH9Q9HC56 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.89■■□□□ 1.73
PCDH9Q9HC56 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.89■■□□□ 1.73
PCDH9Q9HC56 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.88■■□□□ 1.73
PCDH9Q9HC56 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDH9Q9HC56 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
PCDH9Q9HC56 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDH9Q9HC56 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDH9Q9HC56 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
PCDH9Q9HC56 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
PCDH9Q9HC56 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.86■■□□□ 1.73
PCDH9Q9HC56 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
PCDH9Q9HC56 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
PCDH9Q9HC56 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
PCDH9Q9HC56 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDH9Q9HC56 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
PCDH9Q9HC56 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDH9Q9HC56 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDH9Q9HC56 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.85■■□□□ 1.73
PCDH9Q9HC56 LINC01971-201ENST00000617888 1048 ntBASIC25.85■■□□□ 1.73
PCDH9Q9HC56 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDH9Q9HC56 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDH9Q9HC56 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.85■■□□□ 1.73
PCDH9Q9HC56 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
PCDH9Q9HC56 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
PCDH9Q9HC56 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
PCDH9Q9HC56 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PCDH9Q9HC56 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
PCDH9Q9HC56 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
PCDH9Q9HC56 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
PCDH9Q9HC56 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
PCDH9Q9HC56 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PCDH9Q9HC56 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PCDH9Q9HC56 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDH9Q9HC56 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDH9Q9HC56 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDH9Q9HC56 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25.79■■□□□ 1.72
PCDH9Q9HC56 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDH9Q9HC56 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDH9Q9HC56 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.79■■□□□ 1.72
PCDH9Q9HC56 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDH9Q9HC56 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.78■■□□□ 1.72
PCDH9Q9HC56 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.78■■□□□ 1.72
PCDH9Q9HC56 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.78■■□□□ 1.72
PCDH9Q9HC56 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.77■■□□□ 1.72
PCDH9Q9HC56 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
PCDH9Q9HC56 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.77■■□□□ 1.72
PCDH9Q9HC56 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.77■■□□□ 1.72
PCDH9Q9HC56 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDH9Q9HC56 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
PCDH9Q9HC56 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDH9Q9HC56 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.76■■□□□ 1.71
PCDH9Q9HC56 DUX4L11-201ENST00000611504 1267 ntBASIC25.76■■□□□ 1.71
PCDH9Q9HC56 DUX4L12-201ENST00000614593 1267 ntBASIC25.76■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms