Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 PAU5YFL020C 369 nt6.05□□□□□ -1.44
CDC40P40968 PAC10YGR078C 600 nt6.05□□□□□ -1.44
CDC40P40968 FSH2YMR222C 672 nt6.05□□□□□ -1.44
CDC40P40968 THP3YPR045C 1413 nt6.05□□□□□ -1.44
CDC40P40968 VBA3YCL069W 1377 nt6.05□□□□□ -1.44
CDC40P40968 YFL052WYFL052W 1398 nt6.05□□□□□ -1.44
CDC40P40968 SPS22YCL048W 1392 nt6.05□□□□□ -1.44
CDC40P40968 EMW1YNL313C 2715 nt6.05□□□□□ -1.44
CDC40P40968 YGR137WYGR137W 375 nt6.04□□□□□ -1.44
CDC40P40968 RMA1YKL132C 1293 nt6.04□□□□□ -1.44
CDC40P40968 CMR1YDL156W 1569 nt6.04□□□□□ -1.44
CDC40P40968 MSS51YLR203C 1311 nt6.03□□□□□ -1.44
CDC40P40968 TPI1YDR050C 747 nt6.03□□□□□ -1.44
CDC40P40968 SNF4YGL115W 969 nt6.03□□□□□ -1.44
CDC40P40968 SEN2YLR105C 1134 nt6.03□□□□□ -1.44
CDC40P40968 YBL070CYBL070C 321 nt6.03□□□□□ -1.44
CDC40P40968 GAA1YLR088W 1845 nt6.03□□□□□ -1.44
CDC40P40968 SNP1YIL061C 903 nt6.02□□□□□ -1.45
CDC40P40968 LOT6YLR011W 576 nt6.02□□□□□ -1.45
CDC40P40968 VPS65YLR322W 315 nt6.02□□□□□ -1.45
CDC40P40968 YFR006WYFR006W 1608 nt6.02□□□□□ -1.45
CDC40P40968 VBA5YKR105C 1749 nt6.02□□□□□ -1.45
CDC40P40968 ECM30YLR436C 3825 nt6.01□□□□□ -1.45
CDC40P40968 QCR6YFR033C 444 nt6.01□□□□□ -1.45
CDC40P40968 NAS2YIL007C 663 nt6.01□□□□□ -1.45
CDC40P40968 AIM2YAL049C 741 nt6.01□□□□□ -1.45
CDC40P40968 YKR012CYKR012C 378 nt6.01□□□□□ -1.45
CDC40P40968 RRN10YBL025W 438 nt6.01□□□□□ -1.45
CDC40P40968 RSC2YLR357W 2670 nt6.01□□□□□ -1.45
CDC40P40968 SKY1YMR216C 2229 nt6.01□□□□□ -1.45
CDC40P40968 RIX7YLL034C 2514 nt6□□□□□ -1.45
CDC40P40968 FCY2YER056C 1602 nt6□□□□□ -1.45
CDC40P40968 COG1YGL223C 1254 nt6□□□□□ -1.45
CDC40P40968 NMT1YLR195C 1368 nt6□□□□□ -1.45
CDC40P40968 ERG12YMR208W 1332 nt5.99□□□□□ -1.45
CDC40P40968 RSP5YER125W 2430 nt5.99□□□□□ -1.45
CDC40P40968 ELP3YPL086C 1674 nt5.98□□□□□ -1.45
CDC40P40968 SDS24YBR214W 1584 nt5.98□□□□□ -1.45
CDC40P40968 YCR041WYCR041W 333 nt5.98□□□□□ -1.45
CDC40P40968 RSM7YJR113C 744 nt5.98□□□□□ -1.45
CDC40P40968 SMK1YPR054W 1167 nt5.98□□□□□ -1.45
CDC40P40968 HXT15YDL245C 1704 nt5.97□□□□□ -1.45
CDC40P40968 HXT16YJR158W 1704 nt5.97□□□□□ -1.45
CDC40P40968 NUP84YDL116W 2181 nt5.97□□□□□ -1.45
CDC40P40968 EMP65YER140W 1671 nt5.96□□□□□ -1.46
CDC40P40968 IGD1YFR017C 588 nt5.96□□□□□ -1.46
CDC40P40968 HAM1YJR069C 594 nt5.96□□□□□ -1.46
CDC40P40968 YLR112WYLR112W 420 nt5.96□□□□□ -1.46
CDC40P40968 CDD1YLR245C 429 nt5.96□□□□□ -1.46
CDC40P40968 PAU19YMR325W 375 nt5.96□□□□□ -1.46
CDC40P40968 AOS1YPR180W 1044 nt5.96□□□□□ -1.46
CDC40P40968 OPT1YJL212C 2400 nt5.96□□□□□ -1.46
CDC40P40968 YJL064WYJL064W 396 nt5.95□□□□□ -1.46
CDC40P40968 SNF7YLR025W 723 nt5.95□□□□□ -1.46
CDC40P40968 CLN1YMR199W 1641 nt5.95□□□□□ -1.46
CDC40P40968 PRY2YKR013W 990 nt5.94□□□□□ -1.46
CDC40P40968 RNA170RNA170 169 nt5.94□□□□□ -1.46
CDC40P40968 ADH3YMR083W 1128 nt5.94□□□□□ -1.46
CDC40P40968 PUP1YOR157C 786 nt5.94□□□□□ -1.46
CDC40P40968 NUP57YGR119C 1626 nt5.94□□□□□ -1.46
CDC40P40968 TFC6YDR362C 2019 nt5.94□□□□□ -1.46
CDC40P40968 ENO1YGR254W 1314 nt5.94□□□□□ -1.46
CDC40P40968 YFR020WYFR020W 699 nt5.93□□□□□ -1.46
CDC40P40968 PHB2YGR231C 933 nt5.93□□□□□ -1.46
CDC40P40968 HMS2YJR147W 1077 nt5.93□□□□□ -1.46
CDC40P40968 RTC2YBR147W 891 nt5.93□□□□□ -1.46
CDC40P40968 GUF1YLR289W 1938 nt5.93□□□□□ -1.46
CDC40P40968 PDC6YGR087C 1692 nt5.92□□□□□ -1.46
CDC40P40968 GRH1YDR517W 1119 nt5.92□□□□□ -1.46
CDC40P40968 HST2YPL015C 1074 nt5.92□□□□□ -1.46
CDC40P40968 HXT8YJL214W 1710 nt5.91□□□□□ -1.46
CDC40P40968 PAP2YOL115W 1755 nt5.91□□□□□ -1.46
CDC40P40968 MOB1YIL106W 945 nt5.91□□□□□ -1.46
CDC40P40968 CDC11YJR076C 1248 nt5.91□□□□□ -1.46
CDC40P40968 PET10YKR046C 852 nt5.91□□□□□ -1.46
CDC40P40968 ERV25YML012W 636 nt5.91□□□□□ -1.46
CDC40P40968 AFG3YER017C 2286 nt5.91□□□□□ -1.46
CDC40P40968 EXG2YDR261C 1689 nt5.91□□□□□ -1.46
CDC40P40968 YGL260WYGL260W 231 nt5.9□□□□□ -1.46
CDC40P40968 IRS4YKR019C 1848 nt5.9□□□□□ -1.47
CDC40P40968 CYB2YML054C 1776 nt5.89□□□□□ -1.47
CDC40P40968 ERP2YAL007C 648 nt5.89□□□□□ -1.47
CDC40P40968 NTG1YAL015C 1200 nt5.89□□□□□ -1.47
CDC40P40968 YLR460CYLR460C 1131 nt5.89□□□□□ -1.47
CDC40P40968 LIP5YOR196C 1245 nt5.89□□□□□ -1.47
CDC40P40968 SLX5YDL013W 1860 nt5.89□□□□□ -1.47
CDC40P40968 CDC3YLR314C 1563 nt5.89□□□□□ -1.47
CDC40P40968 tA(AGC)DtA(AGC)D 73 nt5.88□□□□□ -1.47
CDC40P40968 tA(AGC)FtA(AGC)F 73 nt5.88□□□□□ -1.47
CDC40P40968 tA(AGC)GtA(AGC)G 73 nt5.88□□□□□ -1.47
CDC40P40968 tA(AGC)HtA(AGC)H 73 nt5.88□□□□□ -1.47
CDC40P40968 tA(AGC)JtA(AGC)J 73 nt5.88□□□□□ -1.47
CDC40P40968 tA(AGC)K1tA(AGC)K1 73 nt5.88□□□□□ -1.47
CDC40P40968 tA(AGC)K2tA(AGC)K2 73 nt5.88□□□□□ -1.47
CDC40P40968 tA(AGC)LtA(AGC)L 73 nt5.88□□□□□ -1.47
CDC40P40968 tA(AGC)M1tA(AGC)M1 73 nt5.88□□□□□ -1.47
CDC40P40968 tA(AGC)M2tA(AGC)M2 73 nt5.88□□□□□ -1.47
CDC40P40968 tA(AGC)PtA(AGC)P 73 nt5.88□□□□□ -1.47
CDC40P40968 YHL030W-AYHL030W-A 462 nt5.88□□□□□ -1.47
CDC40P40968 YKL147CYKL147C 618 nt5.88□□□□□ -1.47
Retrieved 100 of 7,029 protein–RNA pairs in 22.7 ms