RNA–Protein interactions for RNA: ENST00000635193.1

COL11A1-211, Transcript of collagen type XI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL11A1, Length 5,289 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1-211ENST00000635193 DCAF8L2P0C7V8 631 aa19.53■□□□□ 0.72
COL11A1-211ENST00000635193 SUPT5HO00267 1087 aaKnown RBP19.05■□□□□ 0.64
COL11A1-211ENST00000635193 NISCHQ9Y2I1 1504 aa18.89■□□□□ 0.61
COL11A1-211ENST00000635193 PELP1Q8IZL8 1130 aaKnown RBP18.82■□□□□ 0.6
COL11A1-211ENST00000635193 SHROOM4Q9ULL8 1493 aa18.63■□□□□ 0.57
COL11A1-211ENST00000635193 MYT1Q01538 1121 aa18.43■□□□□ 0.54
COL11A1-211ENST00000635193 EHMT2Q96KQ7 1210 aa18.38■□□□□ 0.53
COL11A1-211ENST00000635193 PCGF6Q9BYE7 350 aa18.25■□□□□ 0.51
COL11A1-211ENST00000635193 CENPBP07199 599 aaPredicted RBP18.16■□□□□ 0.5
COL11A1-211ENST00000635193 ERICH6Q7L0X2 663 aa18.07■□□□□ 0.48
COL11A1-211ENST00000635193 APLP2Q06481 763 aa18■□□□□ 0.47
COL11A1-211ENST00000635193 ZEB1P37275 1124 aaPredicted RBP17.96■□□□□ 0.47
COL11A1-211ENST00000635193 FAM9AQ8IZU1 332 aaPredicted RBP17.95■□□□□ 0.46
COL11A1-211ENST00000635193 CCER1Q8TC90 406 aaPredicted RBP17.91■□□□□ 0.46
COL11A1-211ENST00000635193 TTBK1Q5TCY1 1321 aaPredicted RBP17.84■□□□□ 0.45
COL11A1-211ENST00000635193 TRIM41Q8WV44 630 aa17.62■□□□□ 0.41
COL11A1-211ENST00000635193 YTHDC1Q96MU7 727 aaKnown RBP17.58■□□□□ 0.4
COL11A1-211ENST00000635193 NEFLP07196 543 aa17.55■□□□□ 0.4
COL11A1-211ENST00000635193 HRCP23327 699 aa17.54■□□□□ 0.4
COL11A1-211ENST00000635193 RANGAP1P46060 587 aaPredicted RBP17.44■□□□□ 0.38
COL11A1-211ENST00000635193 TRIM26Q12899 539 aaPredicted RBP17.43■□□□□ 0.38
COL11A1-211ENST00000635193 UBTFP17480 764 aaKnown RBP17.34■□□□□ 0.37
COL11A1-211ENST00000635193 PPARGC1BQ86YN6 1023 aaKnown RBP17.29■□□□□ 0.36
COL11A1-211ENST00000635193 ATP1B4Q9UN42 357 aaPredicted RBP17.2■□□□□ 0.34
COL11A1-211ENST00000635193 LOC105371045A0A1W2PR82 267 aa17.11■□□□□ 0.33
COL11A1-211ENST00000635193 CHIC1Q5VXU3 224 aa17.11■□□□□ 0.33
COL11A1-211ENST00000635193 DAXXQ9UER7 740 aaPredicted RBP17.03■□□□□ 0.32
COL11A1-211ENST00000635193 RTL5Q5HYW3 569 aaPredicted RBP16.94■□□□□ 0.3
COL11A1-211ENST00000635193 DIEXFQ68CQ4 756 aaKnown RBP16.92■□□□□ 0.3
COL11A1-211ENST00000635193 HNRNPUL2Q1KMD3 747 aaKnown RBP16.88■□□□□ 0.29
COL11A1-211ENST00000635193 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.86■□□□□ 0.29
COL11A1-211ENST00000635193 GTF3C3Q9Y5Q9 886 aa16.86■□□□□ 0.29
COL11A1-211ENST00000635193 ITGAEP38570 1179 aa16.85■□□□□ 0.29
COL11A1-211ENST00000635193 POLR3GLQ9BT43 218 aa16.71■□□□□ 0.27
COL11A1-211ENST00000635193 ZNF316A6NFI3 1004 aaPredicted RBP16.67■□□□□ 0.26
COL11A1-211ENST00000635193 ACIN1Q9UKV3 1341 aaKnown RBP16.61■□□□□ 0.25
COL11A1-211ENST00000635193 BCANQ96GW7 911 aa16.6■□□□□ 0.25
COL11A1-211ENST00000635193 CNGB1Q14028 1251 aaPredicted RBP16.59■□□□□ 0.25
COL11A1-211ENST00000635193 CDK11AQ9UQ88 783 aaPredicted RBP16.51■□□□□ 0.23
COL11A1-211ENST00000635193 CLSPNQ9HAW4 1339 aa16.46■□□□□ 0.23
COL11A1-211ENST00000635193 ABCC9O60706 1549 aa16.41■□□□□ 0.22
COL11A1-211ENST00000635193 FAM50AQ14320 339 aaKnown RBP16.39■□□□□ 0.21
COL11A1-211ENST00000635193 NEUROD1Q13562 356 aa16.38■□□□□ 0.21
COL11A1-211ENST00000635193 ANP32CO43423 234 aa16.38■□□□□ 0.21
COL11A1-211ENST00000635193 EIF5BO60841 1220 aaKnown RBP16.36■□□□□ 0.21
COL11A1-211ENST00000635193 MYT1LQ9UL68 1186 aa16.32■□□□□ 0.2
COL11A1-211ENST00000635193 ANP32AP39687 249 aaKnown RBP16.27■□□□□ 0.19
COL11A1-211ENST00000635193 TRIM52Q96A61 297 aa16.27■□□□□ 0.19
COL11A1-211ENST00000635193 GLIPR1L2Q4G1C9 344 aa16.23■□□□□ 0.19
COL11A1-211ENST00000635193 SLC4A1APQ9BWU0 796 aaKnown RBP16.21■□□□□ 0.19
COL11A1-211ENST00000635193 SCAF1Q9H7N4 1312 aaKnown RBP16.21■□□□□ 0.19
COL11A1-211ENST00000635193 DCAF1Q9Y4B6 1507 aa16.18■□□□□ 0.18
COL11A1-211ENST00000635193 PABPN1Q86U42 306 aaKnown RBP eCLIP16.13■□□□□ 0.17
COL11A1-211ENST00000635193 FKBP8Q14318 412 aa16.11■□□□□ 0.17
COL11A1-211ENST00000635193 ZNF326Q5BKZ1 582 aaKnown RBP16.1■□□□□ 0.17
COL11A1-211ENST00000635193 NPM2Q86SE8 214 aaKnown RBP16.08■□□□□ 0.16
COL11A1-211ENST00000635193 CSRNP3Q8WYN3 585 aa16.04■□□□□ 0.16
COL11A1-211ENST00000635193 NBR1Q14596 966 aa16■□□□□ 0.15
COL11A1-211ENST00000635193 CANXP27824 592 aaKnown RBP15.96■□□□□ 0.15
COL11A1-211ENST00000635193 ANP32BQ92688 251 aaKnown RBP15.95■□□□□ 0.14
COL11A1-211ENST00000635193 ANP32EQ9BTT0 268 aa15.95■□□□□ 0.14
COL11A1-211ENST00000635193 ZBTB47Q9UFB7 747 aaPredicted RBP15.93■□□□□ 0.14
COL11A1-211ENST00000635193 HNRNPUQ00839 825 aaKnown RBP eCLIP15.92■□□□□ 0.14
COL11A1-211ENST00000635193 DDX10Q13206 875 aaKnown RBP15.9■□□□□ 0.14
COL11A1-211ENST00000635193 MIER1Q8N108 512 aa15.88■□□□□ 0.13
COL11A1-211ENST00000635193 P3H3Q8IVL6 736 aa15.86■□□□□ 0.13
COL11A1-211ENST00000635193 TONSLQ96HA7 1378 aa15.86■□□□□ 0.13
COL11A1-211ENST00000635193 FAM9BQ8IZU0 186 aa15.82■□□□□ 0.12
COL11A1-211ENST00000635193 BCL11AQ9H165 835 aa15.8■□□□□ 0.12
COL11A1-211ENST00000635193 CCDC136Q96JN2 1154 aa15.77■□□□□ 0.11
COL11A1-211ENST00000635193 MYO15BQ96JP2 1530 aa15.77■□□□□ 0.11
COL11A1-211ENST00000635193 UPF2Q9HAU5 1272 aaKnown RBP15.75■□□□□ 0.11
COL11A1-211ENST00000635193 HSP90AA1P07900 732 aaKnown RBP15.74■□□□□ 0.11
COL11A1-211ENST00000635193 ARID3CA6NKF2 412 aa15.72■□□□□ 0.11
COL11A1-211ENST00000635193 NEFMP07197 916 aa15.72■□□□□ 0.11
COL11A1-211ENST00000635193 ARXQ96QS3 562 aa15.72■□□□□ 0.11
COL11A1-211ENST00000635193 ZCCHC6Q5VYS8 1495 aaKnown RBP15.7■□□□□ 0.1
COL11A1-211ENST00000635193 IRX6P78412 446 aaPredicted RBP15.69■□□□□ 0.1
COL11A1-211ENST00000635193 ZNF777Q9ULD5 760 aaPredicted RBP15.67■□□□□ 0.1
COL11A1-211ENST00000635193 CCDC180Q9P1Z9 1646 aa15.67■□□□□ 0.1
COL11A1-211ENST00000635193 SALL2Q9Y467 1007 aaPredicted RBP15.66■□□□□ 0.1
COL11A1-211ENST00000635193 MRS2Q9HD23 443 aa15.66■□□□□ 0.1
COL11A1-211ENST00000635193 TMC1Q8TDI8 760 aa15.65■□□□□ 0.1
COL11A1-211ENST00000635193 FBLN2P98095 1184 aa15.63■□□□□ 0.09
COL11A1-211ENST00000635193 SLC24A1O60721 1099 aa15.61■□□□□ 0.09
COL11A1-211ENST00000635193 SCRIBQ14160 1630 aa15.6■□□□□ 0.09
COL11A1-211ENST00000635193 HIRIP3Q9BW71 556 aaPredicted RBP15.59■□□□□ 0.09
COL11A1-211ENST00000635193 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.58■□□□□ 0.09
COL11A1-211ENST00000635193 RTN4Q9NQC3 1192 aaKnown RBP15.58■□□□□ 0.08
COL11A1-211ENST00000635193 DDRGK1Q96HY6 314 aa15.57■□□□□ 0.08
COL11A1-211ENST00000635193 ERICH6BQ5W0A0 696 aa15.57■□□□□ 0.08
COL11A1-211ENST00000635193 TRIM44Q96DX7 344 aaPredicted RBP15.55■□□□□ 0.08
COL11A1-211ENST00000635193 TNNT2P45379 298 aaPredicted RBP15.55■□□□□ 0.08
COL11A1-211ENST00000635193 CLIP1P30622 1438 aa15.54■□□□□ 0.08
COL11A1-211ENST00000635193 CHIC2Q9UKJ5 165 aa15.54■□□□□ 0.08
COL11A1-211ENST00000635193 PPM1GO15355 546 aaPredicted RBP15.5■□□□□ 0.07
COL11A1-211ENST00000635193 EIF4G2P78344 907 aaKnown RBP eCLIP15.49■□□□□ 0.07
COL11A1-211ENST00000635193 WDR43Q15061 677 aaKnown RBP eCLIP15.49■□□□□ 0.07
COL11A1-211ENST00000635193 CEP162Q5TB80 1403 aa15.49■□□□□ 0.07
COL11A1-211ENST00000635193 SUPT16HQ9Y5B9 1047 aaKnown RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms