RNA–Protein interactions for RNA: ENST00000634403.1

SMARCA2-222, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, human

TSL 2

Gene SMARCA2, Length 497 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA2-222	ENST00000634403	AEBP2	Q6ZN18	517 aa	Predicted RBP	19.9	■□□□□ 0.78
SMARCA2-222	ENST00000634403	CHIC1	Q5VXU3	224 aa		19.69	■□□□□ 0.74
SMARCA2-222	ENST00000634403	PHF23	Q9BUL5	403 aa	Predicted RBP	17.36	■□□□□ 0.37
SMARCA2-222	ENST00000634403	SENP3	Q9H4L4	574 aa	Predicted RBP	16.81	■□□□□ 0.28
SMARCA2-222	ENST00000634403	PLPPR3	Q6T4P5	718 aa		16.1	■□□□□ 0.17
SMARCA2-222	ENST00000634403	FOXD1	Q16676	465 aa		15.59	■□□□□ 0.09
SMARCA2-222	ENST00000634403	ADRA2B	P18089	450 aa		15.23	■□□□□ 0.03
SMARCA2-222	ENST00000634403	PPP6R1	Q9UPN7	881 aa		15.23	■□□□□ 0.03
SMARCA2-222	ENST00000634403	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.78	□□□□□ -0.04
SMARCA2-222	ENST00000634403	KCNA4	P22459	653 aa		14.25	□□□□□ -0.13
SMARCA2-222	ENST00000634403	MSH5	O43196	834 aa		14.24	□□□□□ -0.13
SMARCA2-222	ENST00000634403	PPP4R3CP	Q6ZMV5	832 aa		14.24	□□□□□ -0.13
SMARCA2-222	ENST00000634403	NCBP3	Q53F19	620 aa	Known RBP	13.92	□□□□□ -0.18
SMARCA2-222	ENST00000634403	SCAF1	Q9H7N4	1312 aa	Known RBP	13.89	□□□□□ -0.19
SMARCA2-222	ENST00000634403	CNKSR2	Q8WXI2	1034 aa		13.76	□□□□□ -0.21
SMARCA2-222	ENST00000634403	NPM3	O75607	178 aa	Known RBP	13.75	□□□□□ -0.21
SMARCA2-222	ENST00000634403	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.74	□□□□□ -0.21
SMARCA2-222	ENST00000634403	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.6	□□□□□ -0.23
SMARCA2-222	ENST00000634403	EHMT2	Q96KQ7	1210 aa		13.57	□□□□□ -0.24
SMARCA2-222	ENST00000634403	DMRT2	Q9Y5R5	561 aa		13.47	□□□□□ -0.25
SMARCA2-222	ENST00000634403	RNF216	Q9NWF9	866 aa	Predicted RBP	13.42	□□□□□ -0.26
SMARCA2-222	ENST00000634403	HOXD11	P31277	338 aa	Predicted RBP	13.29	□□□□□ -0.28
SMARCA2-222	ENST00000634403	DNAJC5B	Q9UF47	199 aa		13.26	□□□□□ -0.29
SMARCA2-222	ENST00000634403	CSRNP3	Q8WYN3	585 aa		13.25	□□□□□ -0.29
SMARCA2-222	ENST00000634403	ZBTB22	O15209	634 aa		13.13	□□□□□ -0.31
SMARCA2-222	ENST00000634403	FOXD4L1	Q9NU39	408 aa		13.02	□□□□□ -0.33
SMARCA2-222	ENST00000634403	POTED	Q86YR6	584 aa		13.01	□□□□□ -0.33
SMARCA2-222	ENST00000634403	SLC4A2	P04920	1241 aa		12.91	□□□□□ -0.34
SMARCA2-222	ENST00000634403	DCAF8L1	A6NGE4	600 aa		12.9	□□□□□ -0.34
SMARCA2-222	ENST00000634403	MYCN	P04198	464 aa	Predicted RBP	12.69	□□□□□ -0.38
SMARCA2-222	ENST00000634403	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.69	□□□□□ -0.38
SMARCA2-222	ENST00000634403		U3KPZ7	1027 aa	Predicted RBP	12.52	□□□□□ -0.41
SMARCA2-222	ENST00000634403	ATXN8OS	P0DMR3	200 aa		12.5	□□□□□ -0.41
SMARCA2-222	ENST00000634403	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.42	□□□□□ -0.42
SMARCA2-222	ENST00000634403	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.42	□□□□□ -0.42
SMARCA2-222	ENST00000634403	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.4	□□□□□ -0.42
SMARCA2-222	ENST00000634403	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.36	□□□□□ -0.43
SMARCA2-222	ENST00000634403	RNF39	Q9H2S5	420 aa		12.25	□□□□□ -0.45
SMARCA2-222	ENST00000634403	APLP2	Q06481	763 aa		12.22	□□□□□ -0.45
SMARCA2-222	ENST00000634403	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.11	□□□□□ -0.47
SMARCA2-222	ENST00000634403	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.1	□□□□□ -0.47
SMARCA2-222	ENST00000634403	C1QBP	Q07021	282 aa	Known RBP	12.09	□□□□□ -0.47
SMARCA2-222	ENST00000634403	TRH	P20396	242 aa	Predicted RBP	12.04	□□□□□ -0.48
SMARCA2-222	ENST00000634403	CAPN15	O75808	1086 aa		12.03	□□□□□ -0.48
SMARCA2-222	ENST00000634403	FKBP8	Q14318	412 aa		11.98	□□□□□ -0.49
SMARCA2-222	ENST00000634403	POLA2	Q14181	598 aa		11.89	□□□□□ -0.51
SMARCA2-222	ENST00000634403	ABCB7	O75027	752 aa		11.85	□□□□□ -0.51
SMARCA2-222	ENST00000634403	NISCH	Q9Y2I1	1504 aa		11.84	□□□□□ -0.51
SMARCA2-222	ENST00000634403	MKRN4P	Q13434	485 aa	Predicted RBP	11.83	□□□□□ -0.52
SMARCA2-222	ENST00000634403	FBLN2	P98095	1184 aa		11.79	□□□□□ -0.52
SMARCA2-222	ENST00000634403	DSG3	P32926	999 aa		11.75	□□□□□ -0.53
SMARCA2-222	ENST00000634403	CACNB1	Q02641	598 aa	Predicted RBP	11.73	□□□□□ -0.53
SMARCA2-222	ENST00000634403	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.7	□□□□□ -0.54
SMARCA2-222	ENST00000634403	SPDYE4	A6NLX3	237 aa		11.68	□□□□□ -0.54
SMARCA2-222	ENST00000634403	PROM2	Q8N271	834 aa		11.52	□□□□□ -0.57
SMARCA2-222	ENST00000634403	OSCAR	Q8IYS5	282 aa		11.51	□□□□□ -0.57
SMARCA2-222	ENST00000634403	FBXO3	Q9UK99	471 aa		11.43	□□□□□ -0.58
SMARCA2-222	ENST00000634403	SPDYE2B	A6NHP3	402 aa		11.42	□□□□□ -0.58
SMARCA2-222	ENST00000634403	SPDYE6	P0CI01	402 aa		11.42	□□□□□ -0.58
SMARCA2-222	ENST00000634403	SPDYE2	Q495Y8	402 aa		11.42	□□□□□ -0.58
SMARCA2-222	ENST00000634403	ZNF692	Q9BU19	519 aa	Predicted RBP	11.42	□□□□□ -0.58
SMARCA2-222	ENST00000634403	RTN4	Q9NQC3	1192 aa	Known RBP	11.39	□□□□□ -0.59
SMARCA2-222	ENST00000634403	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.38	□□□□□ -0.59
SMARCA2-222	ENST00000634403	SSUH2	Q9Y2M2	353 aa		11.37	□□□□□ -0.59
SMARCA2-222	ENST00000634403	VASP	P50552	380 aa	Predicted RBP	11.3	□□□□□ -0.6
SMARCA2-222	ENST00000634403	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
SMARCA2-222	ENST00000634403	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.17	□□□□□ -0.62
SMARCA2-222	ENST00000634403	RBM42	Q9BTD8	480 aa	Known RBP	11.17	□□□□□ -0.62
SMARCA2-222	ENST00000634403	STAG3	Q9UJ98	1225 aa		11.16	□□□□□ -0.62
SMARCA2-222	ENST00000634403	AKT1S1	Q96B36	256 aa		11.1	□□□□□ -0.63
SMARCA2-222	ENST00000634403	PLCD3	Q8N3E9	789 aa		11.06	□□□□□ -0.64
SMARCA2-222	ENST00000634403	MIER1	Q8N108	512 aa		11.04	□□□□□ -0.64
SMARCA2-222	ENST00000634403	KLHL34	Q8N239	644 aa		11.04	□□□□□ -0.64
SMARCA2-222	ENST00000634403	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.02	□□□□□ -0.65
SMARCA2-222	ENST00000634403	REM2	Q8IYK8	340 aa	Predicted RBP	11	□□□□□ -0.65
SMARCA2-222	ENST00000634403	SPOCK2	Q92563	424 aa		10.98	□□□□□ -0.65
SMARCA2-222	ENST00000634403	CLEC11A	Q9Y240	323 aa		10.97	□□□□□ -0.65
SMARCA2-222	ENST00000634403	PLEKHG5	O94827	1062 aa		10.95	□□□□□ -0.66
SMARCA2-222	ENST00000634403	PRR29	P0C7W0	189 aa		10.9	□□□□□ -0.66
SMARCA2-222	ENST00000634403	PKD2	Q13563	968 aa		10.9	□□□□□ -0.66
SMARCA2-222	ENST00000634403	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.9	□□□□□ -0.66
SMARCA2-222	ENST00000634403	PITPNM1	O00562	1244 aa		10.89	□□□□□ -0.67
SMARCA2-222	ENST00000634403	CREBZF	Q9NS37	354 aa		10.84	□□□□□ -0.67
SMARCA2-222	ENST00000634403	ECM2	O94769	699 aa	Predicted RBP	10.79	□□□□□ -0.68
SMARCA2-222	ENST00000634403	DCAF8L2	P0C7V8	631 aa		10.79	□□□□□ -0.68
SMARCA2-222	ENST00000634403	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.78	□□□□□ -0.68
SMARCA2-222	ENST00000634403	MNX1	P50219	401 aa	Predicted RBP	10.76	□□□□□ -0.69
SMARCA2-222	ENST00000634403	SLC24A1	O60721	1099 aa		10.74	□□□□□ -0.69
SMARCA2-222	ENST00000634403	NUBP1	P53384	320 aa		10.74	□□□□□ -0.69
SMARCA2-222	ENST00000634403	CHADL	Q6NUI6	762 aa		10.69	□□□□□ -0.7
SMARCA2-222	ENST00000634403	RGL2	O15211	777 aa		10.68	□□□□□ -0.7
SMARCA2-222	ENST00000634403	GSE1	Q14687	1217 aa		10.68	□□□□□ -0.7
SMARCA2-222	ENST00000634403	DCAF8	Q5TAQ9	597 aa		10.66	□□□□□ -0.7
SMARCA2-222	ENST00000634403	RASEF	Q8IZ41	740 aa		10.65	□□□□□ -0.7
SMARCA2-222	ENST00000634403	TRIM41	Q8WV44	630 aa		10.65	□□□□□ -0.7
SMARCA2-222	ENST00000634403	NPM1	P06748	294 aa	Known RBP eCLIP	10.64	□□□□□ -0.71
SMARCA2-222	ENST00000634403	FAM212A	Q96EL1	285 aa		10.64	□□□□□ -0.71
SMARCA2-222	ENST00000634403	CHRDL2	Q6WN34	429 aa		10.62	□□□□□ -0.71
SMARCA2-222	ENST00000634403	PRKAR2A	P13861	404 aa	Known RBP	10.61	□□□□□ -0.71
SMARCA2-222	ENST00000634403	FXR2	P51116	673 aa	Known RBP eCLIP	10.61	□□□□□ -0.71

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