RNA–Protein interactions for RNA: ENST00000601607.5

LINC00343-209, long intergenic non-protein coding RNA 343, humanhuman

TSL 5

Gene LINC00343, Length 590 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-209ENST00000601607 AEBP2Q6ZN18 517 aaPredicted RBP34.45■■■■□ 3.11
LINC00343-209ENST00000601607 CHIC1Q5VXU3 224 aa32.88■■■□□ 2.85
LINC00343-209ENST00000601607 SENP3Q9H4L4 574 aaPredicted RBP29.56■■■□□ 2.32
LINC00343-209ENST00000601607 PHF23Q9BUL5 403 aaPredicted RBP29.09■■■□□ 2.25
LINC00343-209ENST00000601607 FOXD1Q16676 465 aa27.42■■□□□ 1.98
LINC00343-209ENST00000601607 PLPPR3Q6T4P5 718 aa26.36■■□□□ 1.81
LINC00343-209ENST00000601607 MSH5O43196 834 aa25.8■■□□□ 1.72
LINC00343-209ENST00000601607 PIAS4Q8N2W9 510 aaPredicted RBP25.7■■□□□ 1.7
LINC00343-209ENST00000601607 PPP6R1Q9UPN7 881 aa25.61■■□□□ 1.69
LINC00343-209ENST00000601607 ADRA2BP18089 450 aa25.55■■□□□ 1.68
LINC00343-209ENST00000601607 POTEDQ86YR6 584 aa24.96■■□□□ 1.59
LINC00343-209ENST00000601607 SCAF1Q9H7N4 1312 aaKnown RBP23.59■■□□□ 1.37
LINC00343-209ENST00000601607 MAPK8IP2Q13387 824 aaPredicted RBP23.42■■□□□ 1.34
LINC00343-209ENST00000601607 DMRT2Q9Y5R5 561 aa23.41■■□□□ 1.34
LINC00343-209ENST00000601607 PPP4R3CPQ6ZMV5 832 aa23.03■■□□□ 1.28
LINC00343-209ENST00000601607 CNKSR2Q8WXI2 1034 aa22.65■■□□□ 1.22
LINC00343-209ENST00000601607 HOXD11P31277 338 aaPredicted RBP22.57■■□□□ 1.2
LINC00343-209ENST00000601607 RNF216Q9NWF9 866 aaPredicted RBP22.44■■□□□ 1.18
LINC00343-209ENST00000601607 DCAF8L1A6NGE4 600 aa22.42■■□□□ 1.18
LINC00343-209ENST00000601607 NCBP3Q53F19 620 aaKnown RBP22.28■■□□□ 1.16
LINC00343-209ENST00000601607 KCNA4P22459 653 aa22.11■■□□□ 1.13
LINC00343-209ENST00000601607 CACNB1Q02641 598 aaPredicted RBP22.03■■□□□ 1.12
LINC00343-209ENST00000601607 RNF39Q9H2S5 420 aa21.94■■□□□ 1.1
LINC00343-209ENST00000601607 DNAJC5BQ9UF47 199 aa21.9■■□□□ 1.1
LINC00343-209ENST00000601607 NPM3O75607 178 aaKnown RBP21.83■■□□□ 1.09
LINC00343-209ENST00000601607 C1QBPQ07021 282 aaKnown RBP21.69■■□□□ 1.06
LINC00343-209ENST00000601607 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.51■■□□□ 1.03
LINC00343-209ENST00000601607 SLC4A1APQ9BWU0 796 aaKnown RBP21.04■□□□□ 0.96
LINC00343-209ENST00000601607 U3KPZ7 1027 aaPredicted RBP21.01■□□□□ 0.95
LINC00343-209ENST00000601607 SLC4A2P04920 1241 aa20.79■□□□□ 0.92
LINC00343-209ENST00000601607 CAPN15O75808 1086 aa20.69■□□□□ 0.9
LINC00343-209ENST00000601607 APLP2Q06481 763 aa20.65■□□□□ 0.9
LINC00343-209ENST00000601607 SPINK5Q9NQ38 1064 aaPredicted RBP20.65■□□□□ 0.9
LINC00343-209ENST00000601607 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.61■□□□□ 0.89
LINC00343-209ENST00000601607 HNRNPUL2Q1KMD3 747 aaKnown RBP20.61■□□□□ 0.89
LINC00343-209ENST00000601607 DSG3P32926 999 aa20.54■□□□□ 0.88
LINC00343-209ENST00000601607 SAMD1Q6SPF0 538 aaPredicted RBP20.45■□□□□ 0.86
LINC00343-209ENST00000601607 ZNF219Q9P2Y4 722 aaPredicted RBP20.42■□□□□ 0.86
LINC00343-209ENST00000601607 FOXD4L1Q9NU39 408 aa20.37■□□□□ 0.85
LINC00343-209ENST00000601607 ZBTB22O15209 634 aa20.34■□□□□ 0.85
LINC00343-209ENST00000601607 TRHP20396 242 aaPredicted RBP20.34■□□□□ 0.85
LINC00343-209ENST00000601607 EHMT2Q96KQ7 1210 aa20.31■□□□□ 0.84
LINC00343-209ENST00000601607 MYCNP04198 464 aaPredicted RBP20.28■□□□□ 0.84
LINC00343-209ENST00000601607 ABCB7O75027 752 aa20.15■□□□□ 0.82
LINC00343-209ENST00000601607 CSRNP3Q8WYN3 585 aa20.1■□□□□ 0.81
LINC00343-209ENST00000601607 POLA2Q14181 598 aa19.81■□□□□ 0.76
LINC00343-209ENST00000601607 RBM42Q9BTD8 480 aaKnown RBP19.73■□□□□ 0.75
LINC00343-209ENST00000601607 ATXN8OSP0DMR3 200 aa19.65■□□□□ 0.74
LINC00343-209ENST00000601607 ATF5Q9Y2D1 282 aaPredicted RBP19.65■□□□□ 0.74
LINC00343-209ENST00000601607 POTEHQ6S545 545 aa19.61■□□□□ 0.73
LINC00343-209ENST00000601607 ZBTB12Q9Y330 459 aaPredicted RBP19.58■□□□□ 0.72
LINC00343-209ENST00000601607 AKT1S1Q96B36 256 aa19.23■□□□□ 0.67
LINC00343-209ENST00000601607 CHRDL2Q6WN34 429 aa19.18■□□□□ 0.66
LINC00343-209ENST00000601607 OSCARQ8IYS5 282 aa19.17■□□□□ 0.66
LINC00343-209ENST00000601607 FBLN2P98095 1184 aa19.07■□□□□ 0.64
LINC00343-209ENST00000601607 REM2Q8IYK8 340 aaPredicted RBP18.98■□□□□ 0.63
LINC00343-209ENST00000601607 SPDYE2BA6NHP3 402 aa18.91■□□□□ 0.62
LINC00343-209ENST00000601607 SPDYE6P0CI01 402 aa18.91■□□□□ 0.62
LINC00343-209ENST00000601607 SPDYE2Q495Y8 402 aa18.91■□□□□ 0.62
LINC00343-209ENST00000601607 MKRN4PQ13434 485 aaPredicted RBP18.78■□□□□ 0.6
LINC00343-209ENST00000601607 PITPNM1O00562 1244 aa18.77■□□□□ 0.6
LINC00343-209ENST00000601607 PIP4P2Q8N4L2 257 aa18.7■□□□□ 0.58
LINC00343-209ENST00000601607 ZNF692Q9BU19 519 aaPredicted RBP18.64■□□□□ 0.57
LINC00343-209ENST00000601607 FXR2P51116 673 aaKnown RBP eCLIP18.63■□□□□ 0.57
LINC00343-209ENST00000601607 SSUH2Q9Y2M2 353 aa18.61■□□□□ 0.57
LINC00343-209ENST00000601607 SPDYE1Q8NFV5 336 aaPredicted RBP18.57■□□□□ 0.56
LINC00343-209ENST00000601607 CLEC11AQ9Y240 323 aa18.46■□□□□ 0.55
LINC00343-209ENST00000601607 SP7Q8TDD2 431 aaPredicted RBP18.43■□□□□ 0.54
LINC00343-209ENST00000601607 HAX1O00165 279 aa18.37■□□□□ 0.53
LINC00343-209ENST00000601607 PABPN1Q86U42 306 aaKnown RBP eCLIP18.34■□□□□ 0.53
LINC00343-209ENST00000601607 SPDYE4A6NLX3 237 aa18.3■□□□□ 0.52
LINC00343-209ENST00000601607 PRKAR2AP13861 404 aaKnown RBP18.3■□□□□ 0.52
LINC00343-209ENST00000601607 PRR29P0C7W0 189 aa18.2■□□□□ 0.5
LINC00343-209ENST00000601607 FKBP8Q14318 412 aa18.2■□□□□ 0.5
LINC00343-209ENST00000601607 CHADLQ6NUI6 762 aa18.04■□□□□ 0.48
LINC00343-209ENST00000601607 C19orf67A6NJJ6 358 aa18.02■□□□□ 0.48
LINC00343-209ENST00000601607 EVX2Q03828 476 aa18.02■□□□□ 0.48
LINC00343-209ENST00000601607 STAG3Q9UJ98 1225 aa17.97■□□□□ 0.47
LINC00343-209ENST00000601607 PROM2Q8N271 834 aa17.94■□□□□ 0.46
LINC00343-209ENST00000601607 FARP1Q9Y4F1 1045 aaPredicted RBP17.85■□□□□ 0.45
LINC00343-209ENST00000601607 CD44P16070 742 aaKnown RBP17.75■□□□□ 0.43
LINC00343-209ENST00000601607 GABBR2O75899 941 aa17.72■□□□□ 0.43
LINC00343-209ENST00000601607 CREBZFQ9NS37 354 aa17.7■□□□□ 0.42
LINC00343-209ENST00000601607 CLCN6P51797 869 aa17.66■□□□□ 0.42
LINC00343-209ENST00000601607 NISCHQ9Y2I1 1504 aa17.63■□□□□ 0.41
LINC00343-209ENST00000601607 FBXO3Q9UK99 471 aa17.57■□□□□ 0.4
LINC00343-209ENST00000601607 NPM1P06748 294 aaKnown RBP eCLIP17.5■□□□□ 0.39
LINC00343-209ENST00000601607 ZNF579Q8NAF0 562 aaKnown RBP17.5■□□□□ 0.39
LINC00343-209ENST00000601607 ZRANB1Q9UGI0 708 aa17.49■□□□□ 0.39
LINC00343-209ENST00000601607 PAK3O75914 559 aaPredicted RBP17.47■□□□□ 0.39
LINC00343-209ENST00000601607 MNX1P50219 401 aaPredicted RBP17.39■□□□□ 0.37
LINC00343-209ENST00000601607 MIER1Q8N108 512 aa17.39■□□□□ 0.37
LINC00343-209ENST00000601607 VASPP50552 380 aaPredicted RBP17.35■□□□□ 0.37
LINC00343-209ENST00000601607 PLCD3Q8N3E9 789 aa17.35■□□□□ 0.37
LINC00343-209ENST00000601607 DCBLD2Q96PD2 775 aa17.32■□□□□ 0.36
LINC00343-209ENST00000601607 PLEKHG5O94827 1062 aa17.3■□□□□ 0.36
LINC00343-209ENST00000601607 POTEIP0CG38 1075 aa17.28■□□□□ 0.36
LINC00343-209ENST00000601607 LHX8Q68G74 356 aa17.27■□□□□ 0.36
LINC00343-209ENST00000601607 GALR2O43603 387 aaPredicted RBP17.2■□□□□ 0.34
LINC00343-209ENST00000601607 PHF12Q96QT6 1004 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms