RNA–Protein interactions for RNA: ENST00000584966.1

CDH8-213, Transcript of cadherin 8, humanhuman

TSL 2

Gene CDH8, Length 572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH8-213ENST00000584966 AEBP2Q6ZN18 517 aaPredicted RBP24.06■■□□□ 1.44
CDH8-213ENST00000584966 CHIC1Q5VXU3 224 aa22.46■■□□□ 1.19
CDH8-213ENST00000584966 SENP3Q9H4L4 574 aaPredicted RBP20.56■□□□□ 0.88
CDH8-213ENST00000584966 PHF23Q9BUL5 403 aaPredicted RBP20.26■□□□□ 0.83
CDH8-213ENST00000584966 FOXD1Q16676 465 aa19.26■□□□□ 0.67
CDH8-213ENST00000584966 POTEDQ86YR6 584 aa18.6■□□□□ 0.57
CDH8-213ENST00000584966 MSH5O43196 834 aa18.17■□□□□ 0.5
CDH8-213ENST00000584966 PIAS4Q8N2W9 510 aaPredicted RBP17.9■□□□□ 0.46
CDH8-213ENST00000584966 PPP6R1Q9UPN7 881 aa17.65■□□□□ 0.42
CDH8-213ENST00000584966 PLPPR3Q6T4P5 718 aa17.64■□□□□ 0.41
CDH8-213ENST00000584966 ADRA2BP18089 450 aa17.59■□□□□ 0.41
CDH8-213ENST00000584966 MAPK8IP2Q13387 824 aaPredicted RBP16.31■□□□□ 0.2
CDH8-213ENST00000584966 DMRT2Q9Y5R5 561 aa16.23■□□□□ 0.19
CDH8-213ENST00000584966 SCAF1Q9H7N4 1312 aaKnown RBP16.03■□□□□ 0.16
CDH8-213ENST00000584966 CACNB1Q02641 598 aaPredicted RBP15.95■□□□□ 0.14
CDH8-213ENST00000584966 DCAF8L1A6NGE4 600 aa15.69■□□□□ 0.1
CDH8-213ENST00000584966 RNF39Q9H2S5 420 aa15.46■□□□□ 0.07
CDH8-213ENST00000584966 HOXD11P31277 338 aaPredicted RBP15.43■□□□□ 0.06
CDH8-213ENST00000584966 PPP4R3CPQ6ZMV5 832 aa15.43■□□□□ 0.06
CDH8-213ENST00000584966 CNKSR2Q8WXI2 1034 aa15.22■□□□□ 0.03
CDH8-213ENST00000584966 C1QBPQ07021 282 aaKnown RBP15.2■□□□□ 0.02
CDH8-213ENST00000584966 RNF216Q9NWF9 866 aaPredicted RBP15.19■□□□□ 0.02
CDH8-213ENST00000584966 DNAJC5BQ9UF47 199 aa14.92□□□□□ -0.02
CDH8-213ENST00000584966 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.77□□□□□ -0.05
CDH8-213ENST00000584966 NCBP3Q53F19 620 aaKnown RBP14.66□□□□□ -0.06
CDH8-213ENST00000584966 NPM3O75607 178 aaKnown RBP14.48□□□□□ -0.09
CDH8-213ENST00000584966 POTEHQ6S545 545 aa14.48□□□□□ -0.09
CDH8-213ENST00000584966 U3KPZ7 1027 aaPredicted RBP14.38□□□□□ -0.11
CDH8-213ENST00000584966 CAPN15O75808 1086 aa14.36□□□□□ -0.11
CDH8-213ENST00000584966 SPINK5Q9NQ38 1064 aaPredicted RBP14.35□□□□□ -0.11
CDH8-213ENST00000584966 DSG3P32926 999 aa14.34□□□□□ -0.11
CDH8-213ENST00000584966 TRHP20396 242 aaPredicted RBP14.02□□□□□ -0.17
CDH8-213ENST00000584966 ABCB7O75027 752 aa14□□□□□ -0.17
CDH8-213ENST00000584966 SLC4A2P04920 1241 aa13.94□□□□□ -0.18
CDH8-213ENST00000584966 ZNF219Q9P2Y4 722 aaPredicted RBP13.9□□□□□ -0.18
CDH8-213ENST00000584966 APLP2Q06481 763 aa13.88□□□□□ -0.19
CDH8-213ENST00000584966 KCNA4P22459 653 aa13.79□□□□□ -0.2
CDH8-213ENST00000584966 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.76□□□□□ -0.21
CDH8-213ENST00000584966 HNRNPUL2Q1KMD3 747 aaKnown RBP13.76□□□□□ -0.21
CDH8-213ENST00000584966 SAMD1Q6SPF0 538 aaPredicted RBP13.67□□□□□ -0.22
CDH8-213ENST00000584966 RBM42Q9BTD8 480 aaKnown RBP13.67□□□□□ -0.22
CDH8-213ENST00000584966 NISCHQ9Y2I1 1504 aa13.59□□□□□ -0.23
CDH8-213ENST00000584966 CHRDL2Q6WN34 429 aa13.59□□□□□ -0.23
CDH8-213ENST00000584966 POLA2Q14181 598 aa13.5□□□□□ -0.25
CDH8-213ENST00000584966 MYCNP04198 464 aaPredicted RBP13.38□□□□□ -0.27
CDH8-213ENST00000584966 SP7Q8TDD2 431 aaPredicted RBP13.34□□□□□ -0.27
CDH8-213ENST00000584966 AKT1S1Q96B36 256 aa13.26□□□□□ -0.29
CDH8-213ENST00000584966 PIP4P2Q8N4L2 257 aa13.17□□□□□ -0.3
CDH8-213ENST00000584966 REM2Q8IYK8 340 aaPredicted RBP13.16□□□□□ -0.3
CDH8-213ENST00000584966 ATF5Q9Y2D1 282 aaPredicted RBP13.16□□□□□ -0.3
CDH8-213ENST00000584966 ZBTB12Q9Y330 459 aaPredicted RBP13.13□□□□□ -0.31
CDH8-213ENST00000584966 HAX1O00165 279 aa13.1□□□□□ -0.31
CDH8-213ENST00000584966 OSCARQ8IYS5 282 aa13.1□□□□□ -0.31
CDH8-213ENST00000584966 PITPNM1O00562 1244 aa13.04□□□□□ -0.32
CDH8-213ENST00000584966 FXR2P51116 673 aaKnown RBP eCLIP12.99□□□□□ -0.33
CDH8-213ENST00000584966 FOXD4L1Q9NU39 408 aa12.99□□□□□ -0.33
CDH8-213ENST00000584966 SLC4A1APQ9BWU0 796 aaKnown RBP12.91□□□□□ -0.34
CDH8-213ENST00000584966 EVX2Q03828 476 aa12.89□□□□□ -0.35
CDH8-213ENST00000584966 SPDYE2BA6NHP3 402 aa12.71□□□□□ -0.37
CDH8-213ENST00000584966 SPDYE6P0CI01 402 aa12.71□□□□□ -0.37
CDH8-213ENST00000584966 PRKAR2AP13861 404 aaKnown RBP12.71□□□□□ -0.37
CDH8-213ENST00000584966 SPDYE2Q495Y8 402 aa12.71□□□□□ -0.37
CDH8-213ENST00000584966 CLEC11AQ9Y240 323 aa12.69□□□□□ -0.38
CDH8-213ENST00000584966 ZBTB22O15209 634 aa12.66□□□□□ -0.38
CDH8-213ENST00000584966 FBLN2P98095 1184 aa12.65□□□□□ -0.38
CDH8-213ENST00000584966 SPDYE1Q8NFV5 336 aaPredicted RBP12.61□□□□□ -0.39
CDH8-213ENST00000584966 C19orf67A6NJJ6 358 aa12.59□□□□□ -0.39
CDH8-213ENST00000584966 ATXN8OSP0DMR3 200 aa12.58□□□□□ -0.4
CDH8-213ENST00000584966 GABBR2O75899 941 aa12.56□□□□□ -0.4
CDH8-213ENST00000584966 LHX8Q68G74 356 aa12.52□□□□□ -0.41
CDH8-213ENST00000584966 ZNF692Q9BU19 519 aaPredicted RBP12.52□□□□□ -0.41
CDH8-213ENST00000584966 MKRN4PQ13434 485 aaPredicted RBP12.5□□□□□ -0.41
CDH8-213ENST00000584966 CHADLQ6NUI6 762 aa12.5□□□□□ -0.41
CDH8-213ENST00000584966 SSUH2Q9Y2M2 353 aa12.47□□□□□ -0.41
CDH8-213ENST00000584966 PRR29P0C7W0 189 aa12.37□□□□□ -0.43
CDH8-213ENST00000584966 PABPN1Q86U42 306 aaKnown RBP eCLIP12.32□□□□□ -0.44
CDH8-213ENST00000584966 POTEIP0CG38 1075 aa12.28□□□□□ -0.44
CDH8-213ENST00000584966 CD44P16070 742 aaKnown RBP12.27□□□□□ -0.45
CDH8-213ENST00000584966 FARP1Q9Y4F1 1045 aaPredicted RBP12.21□□□□□ -0.45
CDH8-213ENST00000584966 PLSCR2Q9NRY7 297 aa12.18□□□□□ -0.46
CDH8-213ENST00000584966 DCBLD2Q96PD2 775 aa12.13□□□□□ -0.47
CDH8-213ENST00000584966 CLCN6P51797 869 aa12.1□□□□□ -0.47
CDH8-213ENST00000584966 CCDC180Q9P1Z9 1646 aa12.06□□□□□ -0.48
CDH8-213ENST00000584966 ZRANB1Q9UGI0 708 aa12.04□□□□□ -0.48
CDH8-213ENST00000584966 ZNF579Q8NAF0 562 aaKnown RBP12.02□□□□□ -0.49
CDH8-213ENST00000584966 GALR2O43603 387 aaPredicted RBP11.96□□□□□ -0.49
CDH8-213ENST00000584966 CREBZFQ9NS37 354 aa11.93□□□□□ -0.5
CDH8-213ENST00000584966 OTUD5Q96G74 571 aa11.92□□□□□ -0.5
CDH8-213ENST00000584966 POTEB2H3BUK9 544 aa11.89□□□□□ -0.51
CDH8-213ENST00000584966 STAG3Q9UJ98 1225 aa11.84□□□□□ -0.51
CDH8-213ENST00000584966 PHF12Q96QT6 1004 aa11.83□□□□□ -0.52
CDH8-213ENST00000584966 POTEMA6NI47 508 aa11.82□□□□□ -0.52
CDH8-213ENST00000584966 PAK3O75914 559 aaPredicted RBP11.81□□□□□ -0.52
CDH8-213ENST00000584966 EHMT2Q96KQ7 1210 aa11.78□□□□□ -0.52
CDH8-213ENST00000584966 POTEGQ6S5H5 508 aa11.77□□□□□ -0.53
CDH8-213ENST00000584966 PELP1Q8IZL8 1130 aaKnown RBP11.77□□□□□ -0.53
CDH8-213ENST00000584966 NPM1P06748 294 aaKnown RBP eCLIP11.69□□□□□ -0.54
CDH8-213ENST00000584966 SPDYE4A6NLX3 237 aa11.67□□□□□ -0.54
CDH8-213ENST00000584966 METRNQ9UJH8 293 aa11.67□□□□□ -0.54
CDH8-213ENST00000584966 MNX1P50219 401 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms