RNA–Protein interactions for RNA: ENST00000581339.1

RIOK3-206, Transcript of RIO kinase 3, humanhuman

TSL 2

Gene RIOK3, Length 888 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIOK3-206ENST00000581339 AEBP2Q6ZN18 517 aaPredicted RBP28.82■■■□□ 2.2
RIOK3-206ENST00000581339 CHIC1Q5VXU3 224 aa28.28■■■□□ 2.12
RIOK3-206ENST00000581339 PHF23Q9BUL5 403 aaPredicted RBP24.86■■□□□ 1.57
RIOK3-206ENST00000581339 SENP3Q9H4L4 574 aaPredicted RBP24.49■■□□□ 1.51
RIOK3-206ENST00000581339 PLPPR3Q6T4P5 718 aa23.03■■□□□ 1.28
RIOK3-206ENST00000581339 FOXD1Q16676 465 aa22.67■■□□□ 1.22
RIOK3-206ENST00000581339 ADRA2BP18089 450 aa21.9■■□□□ 1.1
RIOK3-206ENST00000581339 PPP6R1Q9UPN7 881 aa21.89■■□□□ 1.09
RIOK3-206ENST00000581339 PIAS4Q8N2W9 510 aaPredicted RBP21.44■■□□□ 1.02
RIOK3-206ENST00000581339 MSH5O43196 834 aa20.9■□□□□ 0.94
RIOK3-206ENST00000581339 PPP4R3CPQ6ZMV5 832 aa20.29■□□□□ 0.84
RIOK3-206ENST00000581339 SCAF1Q9H7N4 1312 aaKnown RBP20.08■□□□□ 0.81
RIOK3-206ENST00000581339 KCNA4P22459 653 aa19.96■□□□□ 0.79
RIOK3-206ENST00000581339 NCBP3Q53F19 620 aaKnown RBP19.84■□□□□ 0.77
RIOK3-206ENST00000581339 MAPK8IP2Q13387 824 aaPredicted RBP19.81■□□□□ 0.76
RIOK3-206ENST00000581339 CNKSR2Q8WXI2 1034 aa19.71■□□□□ 0.75
RIOK3-206ENST00000581339 DMRT2Q9Y5R5 561 aa19.55■□□□□ 0.72
RIOK3-206ENST00000581339 NPM3O75607 178 aaKnown RBP19.5■□□□□ 0.71
RIOK3-206ENST00000581339 RNF216Q9NWF9 866 aaPredicted RBP19.3■□□□□ 0.68
RIOK3-206ENST00000581339 HOXD11P31277 338 aaPredicted RBP19.18■□□□□ 0.66
RIOK3-206ENST00000581339 SLC4A1APQ9BWU0 796 aaKnown RBP19.05■□□□□ 0.64
RIOK3-206ENST00000581339 DNAJC5BQ9UF47 199 aa18.93■□□□□ 0.62
RIOK3-206ENST00000581339 POTEDQ86YR6 584 aa18.8■□□□□ 0.6
RIOK3-206ENST00000581339 DCAF8L1A6NGE4 600 aa18.72■□□□□ 0.59
RIOK3-206ENST00000581339 EHMT2Q96KQ7 1210 aa18.63■□□□□ 0.57
RIOK3-206ENST00000581339 SLC4A2P04920 1241 aa18.38■□□□□ 0.53
RIOK3-206ENST00000581339 ZBTB22O15209 634 aa18.35■□□□□ 0.53
RIOK3-206ENST00000581339 FOXD4L1Q9NU39 408 aa18.35■□□□□ 0.53
RIOK3-206ENST00000581339 CSRNP3Q8WYN3 585 aa18.33■□□□□ 0.52
RIOK3-206ENST00000581339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.32■□□□□ 0.523e-9■□□□□ 9.6
RIOK3-206ENST00000581339 MYCNP04198 464 aaPredicted RBP18.05■□□□□ 0.48
RIOK3-206ENST00000581339 U3KPZ7 1027 aaPredicted RBP18■□□□□ 0.47
RIOK3-206ENST00000581339 RNF39Q9H2S5 420 aa17.91■□□□□ 0.46
RIOK3-206ENST00000581339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.86■□□□□ 0.45
RIOK3-206ENST00000581339 HNRNPUL2Q1KMD3 747 aaKnown RBP17.86■□□□□ 0.45
RIOK3-206ENST00000581339 SAMD1Q6SPF0 538 aaPredicted RBP17.8■□□□□ 0.44
RIOK3-206ENST00000581339 C1QBPQ07021 282 aaKnown RBP17.72■□□□□ 0.43
RIOK3-206ENST00000581339 ATXN8OSP0DMR3 200 aa17.71■□□□□ 0.43
RIOK3-206ENST00000581339 APLP2Q06481 763 aa17.66■□□□□ 0.42
RIOK3-206ENST00000581339 ATF5Q9Y2D1 282 aaPredicted RBP17.5■□□□□ 0.39
RIOK3-206ENST00000581339 SPINK5Q9NQ38 1064 aaPredicted RBP17.46■□□□□ 0.39
RIOK3-206ENST00000581339 CAPN15O75808 1086 aa17.42■□□□□ 0.38
RIOK3-206ENST00000581339 ZNF219Q9P2Y4 722 aaPredicted RBP17.38■□□□□ 0.37
RIOK3-206ENST00000581339 CACNB1Q02641 598 aaPredicted RBP17.37■□□□□ 0.37
RIOK3-206ENST00000581339 TRHP20396 242 aaPredicted RBP17.35■□□□□ 0.37
RIOK3-206ENST00000581339 POLA2Q14181 598 aa17.08■□□□□ 0.32
RIOK3-206ENST00000581339 ABCB7O75027 752 aa17.07■□□□□ 0.32
RIOK3-206ENST00000581339 DSG3P32926 999 aa17.07■□□□□ 0.32
RIOK3-206ENST00000581339 ZBTB12Q9Y330 459 aaPredicted RBP16.86■□□□□ 0.29
RIOK3-206ENST00000581339 FBLN2P98095 1184 aa16.83■□□□□ 0.28
RIOK3-206ENST00000581339 MKRN4PQ13434 485 aaPredicted RBP16.77■□□□□ 0.28
RIOK3-206ENST00000581339 FKBP8Q14318 412 aa16.59■□□□□ 0.25
RIOK3-206ENST00000581339 OSCARQ8IYS5 282 aa16.51■□□□□ 0.23
RIOK3-206ENST00000581339 SPDYE4A6NLX3 237 aa16.48■□□□□ 0.23
RIOK3-206ENST00000581339 SPDYE2BA6NHP3 402 aa16.39■□□□□ 0.21
RIOK3-206ENST00000581339 SPDYE6P0CI01 402 aa16.39■□□□□ 0.21
RIOK3-206ENST00000581339 SPDYE2Q495Y8 402 aa16.39■□□□□ 0.21
RIOK3-206ENST00000581339 ZNF692Q9BU19 519 aaPredicted RBP16.34■□□□□ 0.21
RIOK3-206ENST00000581339 RBM42Q9BTD8 480 aaKnown RBP16.31■□□□□ 0.2
RIOK3-206ENST00000581339 SSUH2Q9Y2M2 353 aa16.27■□□□□ 0.2
RIOK3-206ENST00000581339 PROM2Q8N271 834 aa16.2■□□□□ 0.18
RIOK3-206ENST00000581339 PABPN1Q86U42 306 aaKnown RBP eCLIP16.12■□□□□ 0.17
RIOK3-206ENST00000581339 AKT1S1Q96B36 256 aa16.12■□□□□ 0.17
RIOK3-206ENST00000581339 NISCHQ9Y2I1 1504 aa16.09■□□□□ 0.17
RIOK3-206ENST00000581339 FBXO3Q9UK99 471 aa16■□□□□ 0.15
RIOK3-206ENST00000581339 REM2Q8IYK8 340 aaPredicted RBP15.95■□□□□ 0.14
RIOK3-206ENST00000581339 STAG3Q9UJ98 1225 aa15.9■□□□□ 0.14
RIOK3-206ENST00000581339 SPDYE1Q8NFV5 336 aaPredicted RBP15.89■□□□□ 0.13
RIOK3-206ENST00000581339 CLEC11AQ9Y240 323 aa15.79■□□□□ 0.12
RIOK3-206ENST00000581339 VASPP50552 380 aaPredicted RBP15.77■□□□□ 0.12
RIOK3-206ENST00000581339 PITPNM1O00562 1244 aa15.76■□□□□ 0.11
RIOK3-206ENST00000581339 PRR29P0C7W0 189 aa15.67■□□□□ 0.1
RIOK3-206ENST00000581339 PLCD3Q8N3E9 789 aa15.62■□□□□ 0.09
RIOK3-206ENST00000581339 MIER1Q8N108 512 aa15.61■□□□□ 0.09
RIOK3-206ENST00000581339 CHRDL2Q6WN34 429 aa15.57■□□□□ 0.08
RIOK3-206ENST00000581339 PLEKHG5O94827 1062 aa15.56■□□□□ 0.08
RIOK3-206ENST00000581339 IFNLR1Q8IU57 520 aaPredicted RBP15.53■□□□□ 0.08
RIOK3-206ENST00000581339 KLHL34Q8N239 644 aa15.48■□□□□ 0.07
RIOK3-206ENST00000581339 CREBZFQ9NS37 354 aa15.48■□□□□ 0.07
RIOK3-206ENST00000581339 ZBTB47Q9UFB7 747 aaPredicted RBP15.46■□□□□ 0.07
RIOK3-206ENST00000581339 FXR2P51116 673 aaKnown RBP eCLIP15.43■□□□□ 0.06
RIOK3-206ENST00000581339 PIP4P2Q8N4L2 257 aa15.38■□□□□ 0.05
RIOK3-206ENST00000581339 PRKAR2AP13861 404 aaKnown RBP15.37■□□□□ 0.05
RIOK3-206ENST00000581339 CHADLQ6NUI6 762 aa15.37■□□□□ 0.05
RIOK3-206ENST00000581339 SPOCK2Q92563 424 aa15.36■□□□□ 0.05
RIOK3-206ENST00000581339 AMER1Q5JTC6 1135 aaPredicted RBP15.34■□□□□ 0.05
RIOK3-206ENST00000581339 MNX1P50219 401 aaPredicted RBP15.32■□□□□ 0.04
RIOK3-206ENST00000581339 RTN4Q9NQC3 1192 aaKnown RBP15.27■□□□□ 0.04
RIOK3-206ENST00000581339 FARP1Q9Y4F1 1045 aaPredicted RBP15.27■□□□□ 0.04
RIOK3-206ENST00000581339 NPM1P06748 294 aaKnown RBP eCLIP15.26■□□□□ 0.03
RIOK3-206ENST00000581339 NUBP1P53384 320 aa15.19■□□□□ 0.02
RIOK3-206ENST00000581339 RASEFQ8IZ41 740 aa15.1■□□□□ 0.01
RIOK3-206ENST00000581339 FAM212AQ96EL1 285 aa15.1■□□□□ 0.01
RIOK3-206ENST00000581339 CIZ1Q9ULV3 898 aaPredicted RBP15.1■□□□□ 0.01
RIOK3-206ENST00000581339 GSE1Q14687 1217 aa15.08■□□□□ 0
RIOK3-206ENST00000581339 DCAF8Q5TAQ9 597 aa15.06■□□□□ 0
RIOK3-206ENST00000581339 PKD2Q13563 968 aa15.05■□□□□ -0
RIOK3-206ENST00000581339 TSPYL2Q9H2G4 693 aaPredicted RBP15□□□□□ -0.01
RIOK3-206ENST00000581339 PAK3O75914 559 aaPredicted RBP14.98□□□□□ -0.01
RIOK3-206ENST00000581339 TRIM41Q8WV44 630 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms