RNA–Protein interactions for RNA: ENST00000580283.1

PPP4R1-216, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 2

Gene PPP4R1, Length 378 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-216ENST00000580283 AEBP2Q6ZN18 517 aaPredicted RBP29.3■■■□□ 2.28
PPP4R1-216ENST00000580283 CHIC1Q5VXU3 224 aa28.53■■■□□ 2.16
PPP4R1-216ENST00000580283 PHF23Q9BUL5 403 aaPredicted RBP25.02■■□□□ 1.6
PPP4R1-216ENST00000580283 SENP3Q9H4L4 574 aaPredicted RBP24.98■■□□□ 1.59
PPP4R1-216ENST00000580283 PLPPR3Q6T4P5 718 aa23.15■■□□□ 1.3
PPP4R1-216ENST00000580283 FOXD1Q16676 465 aa23.14■■□□□ 1.29
PPP4R1-216ENST00000580283 ADRA2BP18089 450 aa22.14■■□□□ 1.13
PPP4R1-216ENST00000580283 PPP6R1Q9UPN7 881 aa22.13■■□□□ 1.13
PPP4R1-216ENST00000580283 PIAS4Q8N2W9 510 aaPredicted RBP21.85■■□□□ 1.09
PPP4R1-216ENST00000580283 MSH5O43196 834 aa21.46■■□□□ 1.03
PPP4R1-216ENST00000580283 PPP4R3CPQ6ZMV5 832 aa20.36■□□□□ 0.85
PPP4R1-216ENST00000580283 SCAF1Q9H7N4 1312 aaKnown RBP20.34■□□□□ 0.85
PPP4R1-216ENST00000580283 MAPK8IP2Q13387 824 aaPredicted RBP20.11■□□□□ 0.81
PPP4R1-216ENST00000580283 DMRT2Q9Y5R5 561 aa19.88■□□□□ 0.77
PPP4R1-216ENST00000580283 NCBP3Q53F19 620 aaKnown RBP19.84■□□□□ 0.77
PPP4R1-216ENST00000580283 CNKSR2Q8WXI2 1034 aa19.84■□□□□ 0.77
PPP4R1-216ENST00000580283 POTEDQ86YR6 584 aa19.74■□□□□ 0.75
PPP4R1-216ENST00000580283 KCNA4P22459 653 aa19.71■□□□□ 0.75
PPP4R1-216ENST00000580283 NPM3O75607 178 aaKnown RBP19.47■□□□□ 0.71
PPP4R1-216ENST00000580283 RNF216Q9NWF9 866 aaPredicted RBP19.47■□□□□ 0.71
PPP4R1-216ENST00000580283 HOXD11P31277 338 aaPredicted RBP19.4■□□□□ 0.7
PPP4R1-216ENST00000580283 DCAF8L1A6NGE4 600 aa19.12■□□□□ 0.65
PPP4R1-216ENST00000580283 DNAJC5BQ9UF47 199 aa18.88■□□□□ 0.61
PPP4R1-216ENST00000580283 SLC4A1APQ9BWU0 796 aaKnown RBP18.79■□□□□ 0.6
PPP4R1-216ENST00000580283 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.57■□□□□ 0.562e-6■■□□□ 14.2
PPP4R1-216ENST00000580283 SLC4A2P04920 1241 aa18.39■□□□□ 0.53
PPP4R1-216ENST00000580283 RNF39Q9H2S5 420 aa18.32■□□□□ 0.52
PPP4R1-216ENST00000580283 FOXD4L1Q9NU39 408 aa18.21■□□□□ 0.51
PPP4R1-216ENST00000580283 U3KPZ7 1027 aaPredicted RBP18.19■□□□□ 0.5
PPP4R1-216ENST00000580283 C1QBPQ07021 282 aaKnown RBP18.13■□□□□ 0.49
PPP4R1-216ENST00000580283 EHMT2Q96KQ7 1210 aa18.1■□□□□ 0.49
PPP4R1-216ENST00000580283 ZBTB22O15209 634 aa18.07■□□□□ 0.48
PPP4R1-216ENST00000580283 MYCNP04198 464 aaPredicted RBP18.05■□□□□ 0.48
PPP4R1-216ENST00000580283 CACNB1Q02641 598 aaPredicted RBP18.02■□□□□ 0.48
PPP4R1-216ENST00000580283 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18■□□□□ 0.47
PPP4R1-216ENST00000580283 HNRNPUL2Q1KMD3 747 aaKnown RBP18■□□□□ 0.47
PPP4R1-216ENST00000580283 SAMD1Q6SPF0 538 aaPredicted RBP17.9■□□□□ 0.46
PPP4R1-216ENST00000580283 CSRNP3Q8WYN3 585 aa17.89■□□□□ 0.45
PPP4R1-216ENST00000580283 APLP2Q06481 763 aa17.87■□□□□ 0.45
PPP4R1-216ENST00000580283 CAPN15O75808 1086 aa17.73■□□□□ 0.43
PPP4R1-216ENST00000580283 SPINK5Q9NQ38 1064 aaPredicted RBP17.72■□□□□ 0.43
PPP4R1-216ENST00000580283 TRHP20396 242 aaPredicted RBP17.61■□□□□ 0.41
PPP4R1-216ENST00000580283 ZNF219Q9P2Y4 722 aaPredicted RBP17.6■□□□□ 0.41
PPP4R1-216ENST00000580283 ATXN8OSP0DMR3 200 aa17.58■□□□□ 0.4
PPP4R1-216ENST00000580283 ATF5Q9Y2D1 282 aaPredicted RBP17.49■□□□□ 0.39
PPP4R1-216ENST00000580283 DSG3P32926 999 aa17.39■□□□□ 0.37
PPP4R1-216ENST00000580283 ABCB7O75027 752 aa17.35■□□□□ 0.37
PPP4R1-216ENST00000580283 POLA2Q14181 598 aa17.25■□□□□ 0.35
PPP4R1-216ENST00000580283 ZBTB12Q9Y330 459 aaPredicted RBP17.01■□□□□ 0.31
PPP4R1-216ENST00000580283 FBLN2P98095 1184 aa16.89■□□□□ 0.29
PPP4R1-216ENST00000580283 MKRN4PQ13434 485 aaPredicted RBP16.73■□□□□ 0.27
PPP4R1-216ENST00000580283 OSCARQ8IYS5 282 aa16.67■□□□□ 0.26
PPP4R1-216ENST00000580283 RBM42Q9BTD8 480 aaKnown RBP16.66■□□□□ 0.26
PPP4R1-216ENST00000580283 SPDYE2BA6NHP3 402 aa16.51■□□□□ 0.23
PPP4R1-216ENST00000580283 SPDYE6P0CI01 402 aa16.51■□□□□ 0.23
PPP4R1-216ENST00000580283 SPDYE2Q495Y8 402 aa16.51■□□□□ 0.23
PPP4R1-216ENST00000580283 NISCHQ9Y2I1 1504 aa16.45■□□□□ 0.22
PPP4R1-216ENST00000580283 ZNF692Q9BU19 519 aaPredicted RBP16.44■□□□□ 0.22
PPP4R1-216ENST00000580283 AKT1S1Q96B36 256 aa16.39■□□□□ 0.21
PPP4R1-216ENST00000580283 SPDYE4A6NLX3 237 aa16.36■□□□□ 0.21
PPP4R1-216ENST00000580283 SSUH2Q9Y2M2 353 aa16.32■□□□□ 0.2
PPP4R1-216ENST00000580283 FKBP8Q14318 412 aa16.25■□□□□ 0.19
PPP4R1-216ENST00000580283 REM2Q8IYK8 340 aaPredicted RBP16.21■□□□□ 0.19
PPP4R1-216ENST00000580283 PABPN1Q86U42 306 aaKnown RBP eCLIP16.2■□□□□ 0.18
PPP4R1-216ENST00000580283 SPDYE1Q8NFV5 336 aaPredicted RBP16.08■□□□□ 0.16
PPP4R1-216ENST00000580283 CLEC11AQ9Y240 323 aa16.03■□□□□ 0.16
PPP4R1-216ENST00000580283 PITPNM1O00562 1244 aa16.02■□□□□ 0.16
PPP4R1-216ENST00000580283 CHRDL2Q6WN34 429 aa15.98■□□□□ 0.15
PPP4R1-216ENST00000580283 PROM2Q8N271 834 aa15.98■□□□□ 0.15
PPP4R1-216ENST00000580283 STAG3Q9UJ98 1225 aa15.94■□□□□ 0.14
PPP4R1-216ENST00000580283 PRR29P0C7W0 189 aa15.86■□□□□ 0.13
PPP4R1-216ENST00000580283 FBXO3Q9UK99 471 aa15.75■□□□□ 0.11
PPP4R1-216ENST00000580283 FXR2P51116 673 aaKnown RBP eCLIP15.73■□□□□ 0.11
PPP4R1-216ENST00000580283 PIP4P2Q8N4L2 257 aa15.73■□□□□ 0.11
PPP4R1-216ENST00000580283 PRKAR2AP13861 404 aaKnown RBP15.65■□□□□ 0.1
PPP4R1-216ENST00000580283 POTEHQ6S545 545 aa15.63■□□□□ 0.09
PPP4R1-216ENST00000580283 CHADLQ6NUI6 762 aa15.6■□□□□ 0.09
PPP4R1-216ENST00000580283 PLEKHG5O94827 1062 aa15.56■□□□□ 0.08
PPP4R1-216ENST00000580283 MIER1Q8N108 512 aa15.56■□□□□ 0.08
PPP4R1-216ENST00000580283 CREBZFQ9NS37 354 aa15.55■□□□□ 0.08
PPP4R1-216ENST00000580283 PLCD3Q8N3E9 789 aa15.54■□□□□ 0.08
PPP4R1-216ENST00000580283 VASPP50552 380 aaPredicted RBP15.49■□□□□ 0.07
PPP4R1-216ENST00000580283 FARP1Q9Y4F1 1045 aaPredicted RBP15.44■□□□□ 0.06
PPP4R1-216ENST00000580283 ZBTB47Q9UFB7 747 aaPredicted RBP15.39■□□□□ 0.05
PPP4R1-216ENST00000580283 NPM1P06748 294 aaKnown RBP eCLIP15.37■□□□□ 0.05
PPP4R1-216ENST00000580283 ABCC9O60706 1549 aa15.34■□□□□ 0.05
PPP4R1-216ENST00000580283 KLHL34Q8N239 644 aa15.33■□□□□ 0.04
PPP4R1-216ENST00000580283 HAX1O00165 279 aa15.32■□□□□ 0.04
PPP4R1-216ENST00000580283 MNX1P50219 401 aaPredicted RBP15.32■□□□□ 0.04
PPP4R1-216ENST00000580283 IFNLR1Q8IU57 520 aaPredicted RBP15.22■□□□□ 0.03
PPP4R1-216ENST00000580283 C19orf67A6NJJ6 358 aa15.2■□□□□ 0.02
PPP4R1-216ENST00000580283 CD44P16070 742 aaKnown RBP15.2■□□□□ 0.02
PPP4R1-216ENST00000580283 PAK3O75914 559 aaPredicted RBP15.18■□□□□ 0.02
PPP4R1-216ENST00000580283 SPOCK2Q92563 424 aa15.13■□□□□ 0.01
PPP4R1-216ENST00000580283 NUBP1P53384 320 aa15.1■□□□□ 0.01
PPP4R1-216ENST00000580283 ZRANB1Q9UGI0 708 aa15.1■□□□□ 0.01
PPP4R1-216ENST00000580283 TSPYL2Q9H2G4 693 aaPredicted RBP15.09■□□□□ 0.01
PPP4R1-216ENST00000580283 RASEFQ8IZ41 740 aa15.08■□□□□ 0
PPP4R1-216ENST00000580283 EVX2Q03828 476 aa15.07■□□□□ 0
PPP4R1-216ENST00000580283 FAM212AQ96EL1 285 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms